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The map label for this gene is yhjC [C]

Identifier: 197104632

GI number: 197104632

Start: 1339275

End: 1340201

Strand: Direct

Name: yhjC [C]

Synonym: PHZ_c1166

Alternate gene names: 197104632

Gene position: 1339275-1340201 (Clockwise)

Preceding gene: 197104629

Following gene: 197104636

Centisome position: 33.51

GC content: 73.46

Gene sequence:

>927_bases
ATGGACCGCCTGGACGAACTCGCCGCCTTCGTGGCCGTGGCCGACGCCCGCAGCTTCACCCAGGGCGCGCGCAAGCTGGG
GGTCTCGAGCGCCCAGGTCTCCAAGCTCGTGGCCCGGCTGGAGAACCGGCTGGGCGCGCGGCTGCTGAACCGCACCACGC
GGGACGTGTCGCTGACGGATACGGGCCAGGCCTATCTGGAGCGGGCCCGCGACCTGCTCGACGGCTTCGAGGCGCTGGAG
ACGTCGGTGAAGGACCAGAGCGGCCCCAGCGGGCGGCTGAAGGTCTCGGCGCCGGTCTCGTTCGGCCGCAACCAGCTGAC
TCCCGCGCTGCTGGACTTCGCCGCCGGCTGCAGCGCCGTCTCGCTGGACGTGGTGTTCAGCGACCGGATGGTGAACCTGG
TGGAAGAGGGCTTCGACGTCGCCGTCCGGATCGGCCACCTGTCGGATTCCTCGCTGGTCGCGCGGCGGCTGGCGGCGGTG
CGGCTGGTGACCTGCGCCTCGCCGGACTACCTGGCCCGCGCGGGGACGCCGACCACCCTGGCGGATCTCGCCAGGCACGA
GGCGGTGCTCGACACCAACGCGCGGGATCCGACGGTCTGGCGTTTCGGCCCCCAGTCGGACACGCGGGACGTGCGGGTGC
ACGGACGCCTGTCGTTCAGCGGCGCGGAAGCCTGCGCCGCCGCGGGGGTGGCGGGGTTCGGCCTGATCCGCTCGCCGGCG
TTCGCCGTCGCCGAGGACCTGCGCGCCGGCCGCCTCGTCCCGGTGCTGTGCAACTACGAGCCCGAGGTCATCCACGTGCA
CGCGGTCTATCCGCACGCGCGGCACCTGGCGGCCAAGGTGCGCGCGTTCGTGGACTTCCTGGCGGCGCGCTACGCGGGCG
AACCGGAGTGGCACCAGGGCTGGGGCAGCGTGCACCCCACGCCCTGA

Upstream 100 bases:

>100_bases
CTCTCCCGGTTGAATGGCGTCTCCGGAAGGTGGTGGTGGCCGGTCCTGTTGATAATCGCCCCGGTTTGGATGAGTGTTTT
GCCAAAAGGGAAACAATCTC

Downstream 100 bases:

>100_bases
ACGGCCGGCTCAGGCGAAGGCGATCCAGCGGCCCGCTGCGGCGGTCATCACCCAGACCAGCAGGGCGGCGTAGGCCAGCC
CCTTCGTCGCCGCCCCGGCC

Product: transcriptional regulator,LysR family

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDRLDELAAFVAVADARSFTQGARKLGVSSAQVSKLVARLENRLGARLLNRTTRDVSLTDTGQAYLERARDLLDGFEALE
TSVKDQSGPSGRLKVSAPVSFGRNQLTPALLDFAAGCSAVSLDVVFSDRMVNLVEEGFDVAVRIGHLSDSSLVARRLAAV
RLVTCASPDYLARAGTPTTLADLARHEAVLDTNARDPTVWRFGPQSDTRDVRVHGRLSFSGAEACAAAGVAGFGLIRSPA
FAVAEDLRAGRLVPVLCNYEPEVIHVHAVYPHARHLAAKVRAFVDFLAARYAGEPEWHQGWGSVHPTP

Sequences:

>Translated_308_residues
MDRLDELAAFVAVADARSFTQGARKLGVSSAQVSKLVARLENRLGARLLNRTTRDVSLTDTGQAYLERARDLLDGFEALE
TSVKDQSGPSGRLKVSAPVSFGRNQLTPALLDFAAGCSAVSLDVVFSDRMVNLVEEGFDVAVRIGHLSDSSLVARRLAAV
RLVTCASPDYLARAGTPTTLADLARHEAVLDTNARDPTVWRFGPQSDTRDVRVHGRLSFSGAEACAAAGVAGFGLIRSPA
FAVAEDLRAGRLVPVLCNYEPEVIHVHAVYPHARHLAAKVRAFVDFLAARYAGEPEWHQGWGSVHPTP
>Mature_308_residues
MDRLDELAAFVAVADARSFTQGARKLGVSSAQVSKLVARLENRLGARLLNRTTRDVSLTDTGQAYLERARDLLDGFEALE
TSVKDQSGPSGRLKVSAPVSFGRNQLTPALLDFAAGCSAVSLDVVFSDRMVNLVEEGFDVAVRIGHLSDSSLVARRLAAV
RLVTCASPDYLARAGTPTTLADLARHEAVLDTNARDPTVWRFGPQSDTRDVRVHGRLSFSGAEACAAAGVAGFGLIRSPA
FAVAEDLRAGRLVPVLCNYEPEVIHVHAVYPHARHLAAKVRAFVDFLAARYAGEPEWHQGWGSVHPTP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=34.2465753424658, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=33.4470989761092, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=30.3135888501742, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787589, Length=299, Percent_Identity=30.4347826086957, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=34.3642611683849, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1787128, Length=299, Percent_Identity=29.0969899665552, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789639, Length=289, Percent_Identity=28.719723183391, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1790011, Length=268, Percent_Identity=26.865671641791, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789173, Length=297, Percent_Identity=27.6094276094276, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786448, Length=290, Percent_Identity=24.4827586206897, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=255, Percent_Identity=25.0980392156863, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788748, Length=60, Percent_Identity=50, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33123; Mature: 33123

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDELAAFVAVADARSFTQGARKLGVSSAQVSKLVARLENRLGARLLNRTTRDVSLTD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
TGQAYLERARDLLDGFEALETSVKDQSGPSGRLKVSAPVSFGRNQLTPALLDFAAGCSAV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEE
SLDVVFSDRMVNLVEEGFDVAVRIGHLSDSSLVARRLAAVRLVTCASPDYLARAGTPTTL
EEEEHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHEECCCCHHHHCCCCHHH
ADLARHEAVLDTNARDPTVWRFGPQSDTRDVRVHGRLSFSGAEACAAAGVAGFGLIRSPA
HHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCH
FAVAEDLRAGRLVPVLCNYEPEVIHVHAVYPHARHLAAKVRAFVDFLAARYAGEPEWHQG
HHHHHHHHCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHCC
WGSVHPTP
CCCCCCCC
>Mature Secondary Structure
MDRLDELAAFVAVADARSFTQGARKLGVSSAQVSKLVARLENRLGARLLNRTTRDVSLTD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
TGQAYLERARDLLDGFEALETSVKDQSGPSGRLKVSAPVSFGRNQLTPALLDFAAGCSAV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEE
SLDVVFSDRMVNLVEEGFDVAVRIGHLSDSSLVARRLAAVRLVTCASPDYLARAGTPTTL
EEEEHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHEECCCCHHHHCCCCHHH
ADLARHEAVLDTNARDPTVWRFGPQSDTRDVRVHGRLSFSGAEACAAAGVAGFGLIRSPA
HHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHCCH
FAVAEDLRAGRLVPVLCNYEPEVIHVHAVYPHARHLAAKVRAFVDFLAARYAGEPEWHQG
HHHHHHHHCCCEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHCC
WGSVHPTP
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]