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The map label for this gene is yjfH [C]

Identifier: 197104628

GI number: 197104628

Start: 1334590

End: 1335297

Strand: Direct

Name: yjfH [C]

Synonym: PHZ_c1162

Alternate gene names: 197104628

Gene position: 1334590-1335297 (Clockwise)

Preceding gene: 197104627

Following gene: 197104629

Centisome position: 33.4

GC content: 73.31

Gene sequence:

>708_bases
GTGGCCGAGGGACGGGTGGTGCTCGAGAAGGCGGCCCGCGCCATGCCGGAGCGTATCGTCTCGGTGCTCGTCGCCGAGAA
CCGGCTGGCGGCGCTGGGGCCGGTGCTGGCGGACCTGCCGCCCGGTACGCCGGTCTATGCGGCAGGACAGGCGGTGATGG
ACTCCATCGTCGGCTTCCCGATCCACCGCGGGATCCTGGCTCTGGGTCGGCGGCCGGAGCGGTCGGCGGCCGGGCTGCTG
GCGGGATTGCCGGACCGGGCGCTGGTGGTCGGGCTGTCGGCCATCGCCAACCACGACAACATCGGCGGGATCTTCCGCAA
CGCCGCGGCTTTCGGGGCGCACGCGGTGATCCTGGACGCCGCCTGTTGCGATCCGCTGTACCGCAAGGCGATCCGGGTCA
GCGTGGGGGCGGCGTTGACCATGCCGTTCGCCCGCCTCGAAGCGGGGGAGGACCTCGTGGGCGCACTTGCGGGCGCCGGC
CTGGAGGTGCTGGCGCTCAGTCCGGCCGGGGAGACGGACCTGGCCGACCTTGCGCCGCCTGCGCGCGTGGCGGCCCTGTT
CGGGGCCGAAGGCCCCGGCCTGCCCGATGACGTGCTGGCGCGGACCCGGACCGTCCGCATTCCCATGGCCGGCGGCTTCG
ATTCGCTGAACGTCGCCACCACCAGCGGGATCGTCCTGCACCACCTGACCGCAAAGGGTGCGGCCTAA

Upstream 100 bases:

>100_bases
CGCGCCGGAGGCGATCCGGGTCACCGACCCGGGCGACCCTCGCATCGAGGGCTACCGCGCGGTCCGCGAGCGCGATCTCG
CGGGCCGCGACGGCCTGTTC

Downstream 100 bases:

>100_bases
AGCCAAGTTTAACCTCGCGGTGCGATCCTAGACCGTCGCGGCGCATGTCTGCCGTGGGCGGGAGGAACATGAAGCGCAAG
GCGCGGACCGTCGCGGGCAG

Product: spoU rRNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MAEGRVVLEKAARAMPERIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFPIHRGILALGRRPERSAAGLL
AGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDAACCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGALAGAG
LEVLALSPAGETDLADLAPPARVAALFGAEGPGLPDDVLARTRTVRIPMAGGFDSLNVATTSGIVLHHLTAKGAA

Sequences:

>Translated_235_residues
MAEGRVVLEKAARAMPERIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFPIHRGILALGRRPERSAAGLL
AGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDAACCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGALAGAG
LEVLALSPAGETDLADLAPPARVAALFGAEGPGLPDDVLARTRTVRIPMAGGFDSLNVATTSGIVLHHLTAKGAA
>Mature_234_residues
AEGRVVLEKAARAMPERIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFPIHRGILALGRRPERSAAGLLA
GLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDAACCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGALAGAGL
EVLALSPAGETDLADLAPPARVAALFGAEGPGLPDDVLARTRTVRIPMAGGFDSLNVATTSGIVLHHLTAKGAA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=231, Percent_Identity=29.004329004329, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 23791; Mature: 23660

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEGRVVLEKAARAMPERIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCH
IHRGILALGRRPERSAAGLLAGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDA
HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHEEHHH
ACCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGALAGAGLEVLALSPAGETDLADLAPP
HHCCHHHHHHHHHHHCHHHHCCHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCHHHCCCH
ARVAALFGAEGPGLPDDVLARTRTVRIPMAGGFDSLNVATTSGIVLHHLTAKGAA
HHHHHHHCCCCCCCCHHHHHHHEEEEEECCCCCCCCCEEECCCEEEEEECCCCCC
>Mature Secondary Structure 
AEGRVVLEKAARAMPERIVSVLVAENRLAALGPVLADLPPGTPVYAAGQAVMDSIVGFP
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCH
IHRGILALGRRPERSAAGLLAGLPDRALVVGLSAIANHDNIGGIFRNAAAFGAHAVILDA
HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHEEHHH
ACCDPLYRKAIRVSVGAALTMPFARLEAGEDLVGALAGAGLEVLALSPAGETDLADLAPP
HHCCHHHHHHHHHHHCHHHHCCHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCHHHCCCH
ARVAALFGAEGPGLPDDVLARTRTVRIPMAGGFDSLNVATTSGIVLHHLTAKGAA
HHHHHHHCCCCCCCCHHHHHHHEEEEEECCCCCCCCCEEECCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]