| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197104591
Identifier: 197104591
GI number: 197104591
Start: 1286765
End: 1288363
Strand: Direct
Name: 197104591
Synonym: PHZ_c1125
Alternate gene names: NA
Gene position: 1286765-1288363 (Clockwise)
Preceding gene: 197104590
Following gene: 197104592
Centisome position: 32.2
GC content: 73.3
Gene sequence:
>1599_bases GTGGCGACGCTGCGGCTGATCATGTCGGGGGCGGTGGTCGGCCAGGAGCTGGCCGCCGAGTTCGGGCCCCTGCCGCCCGC GTTCCTGCCGGTCGGCACGCGCCGGCTCTACGACCTGCAGCTCGATGCGCTGGAGGGGGCCGAGGGCCTCCACATGGTGC TGCCCGAGACCTTCCGCCTGGCGGCGCACGACGCCCGGCGGCTGGCCGAGCGGGGCATCGAGGTCCTGACCGTCCCGGAG GGCCTGCGGCTGGGCGAGGCGCTGGTCTATGCGATCAACTCGGTGGGGGCGGGCGAGGGGCCGGTGCACGTGCTGCACGG CGACACCCTGATCGCCCGGCCGCCGCTGGACCGTCACGACGTCATCGTCGGCGGCCCCCGGGCCAACGAATACGCCTGGG CCGAGATGCGCCTGGGGCAGGACGGCCAGGTCCTGGGGCTGGAGACCACGGCGGCCGGCGAGGATGGGCAGGAGGGCCGG CCCATCGCCGCCGGCTACTTCAGCTTCTCCTCCTCGCTGGGGCTGCTGCGCTCGCTCACCCGGATGCGGGGCGACTTCAT CGCCGGCGTGAACCACTACCTAGGCGAGCGGCGCATGGAGACCGTCCCGGCCGCCGAATGGCTGGACTTCGGCCACCTGC AGACCTTCTTCCAGTCGCGGTTGGCGGTCACCACGGCCCGGGCGTTCAACACCGTGCGGATCGACGGGCTGACCGCGCGC AAGTCGAGCCAGGACCGGGCGAAGATCCGCGCTGAGGCCCACTGGCTGAACGCCATCCCCGCGCCGGTGCAGATCCATAC CGCGCGGCTGCTGGCCCATGGGGTGGCGGACGGGAACGCCTTCTACGAGACCGAGTACGCCTTCCTGCCGGTGGTTTCGG AGCTGTTCGTCCACGGCCAGCTCGGCCGCCACTCGTGGATGCGGGTGCTGTCGGCCATCGAGGCGCTGCTCGCCGCCTGC GCCGCCGACACGGGCGAAGGCTCGGCCGACGCGGCGCTGCGGGCTCTGTGCGTCGACAAGACGGCCGCGCGGCTGGAGCG TTTCGCCCGCGAGACGGGCTTTCCGATCGACAGGCCGCTGCGCTACGCCGGCCGGCCGACCCCCTCGCTCACCGAGATCG CGGAGCGGCTGGCGCAGGCCCTGGACCTGGAGAGCGGCCGGCGCGAGTGCGTCATGCACGGCGACCTGTGCTTCTCGAAC CTGCTCTACGACAGCCGCCTGCGCCGGGTGCGCGCGCTCGACCCGCGCGGCCTGGTGGGGGAGCGGCCGGGGATCTACGG CGACCTGCGCTACGACCTCGCCAAGCTCGCCCACTCGGCGGTGGGCCGCTACGACCAGATCATCGCCGGCCGCTACGACC TGGCCGAGGCCGACGGCGACTTCGAGCTGACCTTCGAGGAGATCGCCGCCCAGCCCTGGCTGGAGGGAGCGCTCGGCGAG ATGCGGGTCGACGGCGCGGAGGCGCTCTCGCTCACCGTGCAGGCCGCGATGACGGGGCTGTTCCTGTCGATGCTGCCGCT GCACGCCGACCGGCCCGACCGCCAGCGGGCGTTCCTGGCCAATGCGCTGCGGCTCCACCGGGACCTCGAAGCCGGATGA
Upstream 100 bases:
>100_bases GGACGGGTTCTACATCGACGACAAGGCCGTCCGGCCCAGCGAGTTCGTGAAGCTCTCGCCGCAGGAGATCCAGGCCCTGC TCGACGCCGAGCGCTGAGGC
Downstream 100 bases:
>100_bases TCGTCATTCCCATGGCGGGCCGCTCGCAGCGGTTCCTCGACGCCGGCTACGACCGGCCCAAGCACGCCCTGCCGCTGCAC GGCCGCAGCGTCTTCGACCA
Product: capsular polysaccharide biosynthesis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 532; Mature: 531
Protein sequence:
>532_residues MATLRLIMSGAVVGQELAAEFGPLPPAFLPVGTRRLYDLQLDALEGAEGLHMVLPETFRLAAHDARRLAERGIEVLTVPE GLRLGEALVYAINSVGAGEGPVHVLHGDTLIARPPLDRHDVIVGGPRANEYAWAEMRLGQDGQVLGLETTAAGEDGQEGR PIAAGYFSFSSSLGLLRSLTRMRGDFIAGVNHYLGERRMETVPAAEWLDFGHLQTFFQSRLAVTTARAFNTVRIDGLTAR KSSQDRAKIRAEAHWLNAIPAPVQIHTARLLAHGVADGNAFYETEYAFLPVVSELFVHGQLGRHSWMRVLSAIEALLAAC AADTGEGSADAALRALCVDKTAARLERFARETGFPIDRPLRYAGRPTPSLTEIAERLAQALDLESGRRECVMHGDLCFSN LLYDSRLRRVRALDPRGLVGERPGIYGDLRYDLAKLAHSAVGRYDQIIAGRYDLAEADGDFELTFEEIAAQPWLEGALGE MRVDGAEALSLTVQAAMTGLFLSMLPLHADRPDRQRAFLANALRLHRDLEAG
Sequences:
>Translated_532_residues MATLRLIMSGAVVGQELAAEFGPLPPAFLPVGTRRLYDLQLDALEGAEGLHMVLPETFRLAAHDARRLAERGIEVLTVPE GLRLGEALVYAINSVGAGEGPVHVLHGDTLIARPPLDRHDVIVGGPRANEYAWAEMRLGQDGQVLGLETTAAGEDGQEGR PIAAGYFSFSSSLGLLRSLTRMRGDFIAGVNHYLGERRMETVPAAEWLDFGHLQTFFQSRLAVTTARAFNTVRIDGLTAR KSSQDRAKIRAEAHWLNAIPAPVQIHTARLLAHGVADGNAFYETEYAFLPVVSELFVHGQLGRHSWMRVLSAIEALLAAC AADTGEGSADAALRALCVDKTAARLERFARETGFPIDRPLRYAGRPTPSLTEIAERLAQALDLESGRRECVMHGDLCFSN LLYDSRLRRVRALDPRGLVGERPGIYGDLRYDLAKLAHSAVGRYDQIIAGRYDLAEADGDFELTFEEIAAQPWLEGALGE MRVDGAEALSLTVQAAMTGLFLSMLPLHADRPDRQRAFLANALRLHRDLEAG >Mature_531_residues ATLRLIMSGAVVGQELAAEFGPLPPAFLPVGTRRLYDLQLDALEGAEGLHMVLPETFRLAAHDARRLAERGIEVLTVPEG LRLGEALVYAINSVGAGEGPVHVLHGDTLIARPPLDRHDVIVGGPRANEYAWAEMRLGQDGQVLGLETTAAGEDGQEGRP IAAGYFSFSSSLGLLRSLTRMRGDFIAGVNHYLGERRMETVPAAEWLDFGHLQTFFQSRLAVTTARAFNTVRIDGLTARK SSQDRAKIRAEAHWLNAIPAPVQIHTARLLAHGVADGNAFYETEYAFLPVVSELFVHGQLGRHSWMRVLSAIEALLAACA ADTGEGSADAALRALCVDKTAARLERFARETGFPIDRPLRYAGRPTPSLTEIAERLAQALDLESGRRECVMHGDLCFSNL LYDSRLRRVRALDPRGLVGERPGIYGDLRYDLAKLAHSAVGRYDQIIAGRYDLAEADGDFELTFEEIAAQPWLEGALGEM RVDGAEALSLTVQAAMTGLFLSMLPLHADRPDRQRAFLANALRLHRDLEAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58065; Mature: 57934
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00109 PROTEIN_KINASE_TYR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATLRLIMSGAVVGQELAAEFGPLPPAFLPVGTRRLYDLQLDALEGAEGLHMVLPETFRL CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHCCCCCEEECCCHHHHH AAHDARRLAERGIEVLTVPEGLRLGEALVYAINSVGAGEGPVHVLHGDTLIARPPLDRHD HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCEEEECCCCCCCC VIVGGPRANEYAWAEMRLGQDGQVLGLETTAAGEDGQEGRPIAAGYFSFSSSLGLLRSLT EEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHH RMRGDFIAGVNHYLGERRMETVPAAEWLDFGHLQTFFQSRLAVTTARAFNTVRIDGLTAR HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEECC KSSQDRAKIRAEAHWLNAIPAPVQIHTARLLAHGVADGNAFYETEYAFLPVVSELFVHGQ CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHCC LGRHSWMRVLSAIEALLAACAADTGEGSADAALRALCVDKTAARLERFARETGFPIDRPL CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH RYAGRPTPSLTEIAERLAQALDLESGRRECVMHGDLCFSNLLYDSRLRRVRALDPRGLVG HHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCC ERPGIYGDLRYDLAKLAHSAVGRYDQIIAGRYDLAEADGDFELTFEEIAAQPWLEGALGE CCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEHHHHHCCCHHHHCHHH MRVDGAEALSLTVQAAMTGLFLSMLPLHADRPDRQRAFLANALRLHRDLEAG HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ATLRLIMSGAVVGQELAAEFGPLPPAFLPVGTRRLYDLQLDALEGAEGLHMVLPETFRL CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHCCCCCEEECCCHHHHH AAHDARRLAERGIEVLTVPEGLRLGEALVYAINSVGAGEGPVHVLHGDTLIARPPLDRHD HHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCEEEECCCCCCCC VIVGGPRANEYAWAEMRLGQDGQVLGLETTAAGEDGQEGRPIAAGYFSFSSSLGLLRSLT EEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHH RMRGDFIAGVNHYLGERRMETVPAAEWLDFGHLQTFFQSRLAVTTARAFNTVRIDGLTAR HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEECC KSSQDRAKIRAEAHWLNAIPAPVQIHTARLLAHGVADGNAFYETEYAFLPVVSELFVHGQ CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHCC LGRHSWMRVLSAIEALLAACAADTGEGSADAALRALCVDKTAARLERFARETGFPIDRPL CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH RYAGRPTPSLTEIAERLAQALDLESGRRECVMHGDLCFSNLLYDSRLRRVRALDPRGLVG HHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCC ERPGIYGDLRYDLAKLAHSAVGRYDQIIAGRYDLAEADGDFELTFEEIAAQPWLEGALGE CCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCEEEHHHHHCCCHHHHCHHH MRVDGAEALSLTVQAAMTGLFLSMLPLHADRPDRQRAFLANALRLHRDLEAG HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA