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The map label for this gene is arpC [H]

Identifier: 197104439

GI number: 197104439

Start: 1072544

End: 1073947

Strand: Reverse

Name: arpC [H]

Synonym: PHZ_c0973

Alternate gene names: 197104439

Gene position: 1073947-1072544 (Counterclockwise)

Preceding gene: 197104440

Following gene: 197104430

Centisome position: 26.87

GC content: 79.13

Gene sequence:

>1404_bases
GTGAGCGCCCGCATCCTGCTGACGGCCGCCGCCGCGGCCGCCCTCGTCTCCGCCTGCGCCACCGGCCCGGACTACAAGGC
GCCCGGCGCGATGGCCGGGACCTCCGGCGCCTTCGTCGGCGCCGGGGCGGCGCCCGTCGAGGCCGCCGAGCCCCCCGCCG
ACTGGTGGCGGCTCTACCAGGACCCCGCGCTGGACCGCCTGATCTCCGAGGCGCTGGCCAACAACCGCGACGTGGCCGTG
GCCGCCGCCAACCTGGCGCAGGTCCGGGCCTCGCTGTCCGAAGCCCGCGTCGGCCGCCTGCCGTCCACGACGGCGAGCGG
CGGGGCGGCGCGCAGCCGCCAGCCCGACCCCGCCACCGGCCGGATGGTGGAGGGCGACACCGTCTCGGCGGGGCTCGACG
TCTCGTACGAGGTGGACTTCTTCGGCCGGGTCGGCCGCGCGATCGAGGCGGCCCGCGCCGACCGCGACGCGGCCCAGGCG
GCGCTGGACGTGGTGCGGGTCTCGGTCGCCGCCGAGACCGCCCGCGCCTACGCCGACGCGTGCGCCGCCGGCGCCCAGCT
GGAGGTCGCCGGCCGCTCGCTGGCGCTGTCCGAGGAGACCGCCGCCCTCACCCGCCGGCAGCTGGACGCCGGCCGCGGCA
CCGGCCTCGACGTCGCGCGCGCCCAGGCCCAGGCCGAGAGCGCCCGGGCGGCCGTCCCGCCCCTGCAGGCCCAGCGCGAC
GCCGCGCTGTTCCGGCTGTCGGTGCTGACGGGCCGCCCGCCGGCCGAGGTCTCGCCCGCGGCCGCCGCCTGCACGGCCAT
TCCGCAGCTCGAAGCGGCGATCCCCGTCGGCGACGGCGCCTCGCTGCTCGCGCGGCGTCCCGACGTGCGTCAGGCCGAGC
GGCGCCTGGCCGCGGCCACCGCCCGCATCGGCGTGGCCACCGCCGCGCTCTATCCGCGCGTGACCCTGGGCGGCTCGCTG
GCCAGCGTCGGCGGCGAGGGCCGGGACCTGGGCGACCAGGTCTCGTTCAGCGTCGGCCCGCTGATCAGCTGGAGCTTCCC
GAACATCGGGCTCGCCCGCGCCCGCATCGCCCAGGCCGACGCGGCGGCCCAGGGCGCCCTGGCGGCCTTCGAGCAGACGA
CCCTGACCGCGCTGCAGGAGACCGAGACGGCGCTGTCCGCCTATGGGCGCGAGCTCGACCGGCGCACGGCCCTGCGCCGC
GCCCGCGACGAGAGCGCGGAGGCGGTGCGGCTGGCGCGCCTGCGCCAGGGCGCCGGGCTGGACAGCTTCCTGACCGTGCT
CGACGCCGAACGGACGCTGGCCGGCCTGGAGGCGCAGCTCGCCCAGTCGGAGGCCCTGGTCGCCTCGAACCAGATCACGC
TGTTCAAGGCCCTGGGCGGCGGCTGGCGCACGGACGGCGGCTGA

Upstream 100 bases:

>100_bases
CGCCGGTCTTCTACGTGGTCTGCCGCAAGCTGGCCGAGCGTCTGCCCAAGCCGCCGCCCAAGGACGCGCCGGCGACGACC
CAGATCGAAGGGAGCCGCCC

Downstream 100 bases:

>100_bases
GGCCGCTCACGCGGCGGCTTCGATCCTGCCCGCACCTCCGCGGGCGAGACCCCGGGCCACCGCCTCGCCCACGACCAGCA
GGACCGGTCCCTCCGCGCGG

Product: outer membrane efflux protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 466

Protein sequence:

>467_residues
MSARILLTAAAAAALVSACATGPDYKAPGAMAGTSGAFVGAGAAPVEAAEPPADWWRLYQDPALDRLISEALANNRDVAV
AAANLAQVRASLSEARVGRLPSTTASGGAARSRQPDPATGRMVEGDTVSAGLDVSYEVDFFGRVGRAIEAARADRDAAQA
ALDVVRVSVAAETARAYADACAAGAQLEVAGRSLALSEETAALTRRQLDAGRGTGLDVARAQAQAESARAAVPPLQAQRD
AALFRLSVLTGRPPAEVSPAAAACTAIPQLEAAIPVGDGASLLARRPDVRQAERRLAAATARIGVATAALYPRVTLGGSL
ASVGGEGRDLGDQVSFSVGPLISWSFPNIGLARARIAQADAAAQGALAAFEQTTLTALQETETALSAYGRELDRRTALRR
ARDESAEAVRLARLRQGAGLDSFLTVLDAERTLAGLEAQLAQSEALVASNQITLFKALGGGWRTDGG

Sequences:

>Translated_467_residues
MSARILLTAAAAAALVSACATGPDYKAPGAMAGTSGAFVGAGAAPVEAAEPPADWWRLYQDPALDRLISEALANNRDVAV
AAANLAQVRASLSEARVGRLPSTTASGGAARSRQPDPATGRMVEGDTVSAGLDVSYEVDFFGRVGRAIEAARADRDAAQA
ALDVVRVSVAAETARAYADACAAGAQLEVAGRSLALSEETAALTRRQLDAGRGTGLDVARAQAQAESARAAVPPLQAQRD
AALFRLSVLTGRPPAEVSPAAAACTAIPQLEAAIPVGDGASLLARRPDVRQAERRLAAATARIGVATAALYPRVTLGGSL
ASVGGEGRDLGDQVSFSVGPLISWSFPNIGLARARIAQADAAAQGALAAFEQTTLTALQETETALSAYGRELDRRTALRR
ARDESAEAVRLARLRQGAGLDSFLTVLDAERTLAGLEAQLAQSEALVASNQITLFKALGGGWRTDGG
>Mature_466_residues
SARILLTAAAAAALVSACATGPDYKAPGAMAGTSGAFVGAGAAPVEAAEPPADWWRLYQDPALDRLISEALANNRDVAVA
AANLAQVRASLSEARVGRLPSTTASGGAARSRQPDPATGRMVEGDTVSAGLDVSYEVDFFGRVGRAIEAARADRDAAQAA
LDVVRVSVAAETARAYADACAAGAQLEVAGRSLALSEETAALTRRQLDAGRGTGLDVARAQAQAESARAAVPPLQAQRDA
ALFRLSVLTGRPPAEVSPAAAACTAIPQLEAAIPVGDGASLLARRPDVRQAERRLAAATARIGVATAALYPRVTLGGSLA
SVGGEGRDLGDQVSFSVGPLISWSFPNIGLARARIAQADAAAQGALAAFEQTTLTALQETETALSAYGRELDRRTALRRA
RDESAEAVRLARLRQGAGLDSFLTVLDAERTLAGLEAQLAQSEALVASNQITLFKALGGGWRTDGG

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=468, Percent_Identity=28.6324786324786, Blast_Score=153, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 47767; Mature: 47636

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARILLTAAAAAALVSACATGPDYKAPGAMAGTSGAFVGAGAAPVEAAEPPADWWRLYQ
CCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHH
DPALDRLISEALANNRDVAVAAANLAQVRASLSEARVGRLPSTTASGGAARSRQPDPATG
CHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
RMVEGDTVSAGLDVSYEVDFFGRVGRAIEAARADRDAAQAALDVVRVSVAAETARAYADA
CEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAAGAQLEVAGRSLALSEETAALTRRQLDAGRGTGLDVARAQAQAESARAAVPPLQAQRD
HHCCCEEEECCCEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
AALFRLSVLTGRPPAEVSPAAAACTAIPQLEAAIPVGDGASLLARRPDVRQAERRLAAAT
HHHEEEEECCCCCCCCCCCHHHHHHHCCCHHHEECCCCCHHHHHCCCCHHHHHHHHHHHH
ARIGVATAALYPRVTLGGSLASVGGEGRDLGDQVSFSVGPLISWSFPNIGLARARIAQAD
HHHHHHHHHHCCCEEECCCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH
AAAQGALAAFEQTTLTALQETETALSAYGRELDRRTALRRARDESAEAVRLARLRQGAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DSFLTVLDAERTLAGLEAQLAQSEALVASNQITLFKALGGGWRTDGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
>Mature Secondary Structure 
SARILLTAAAAAALVSACATGPDYKAPGAMAGTSGAFVGAGAAPVEAAEPPADWWRLYQ
CCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHH
DPALDRLISEALANNRDVAVAAANLAQVRASLSEARVGRLPSTTASGGAARSRQPDPATG
CHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
RMVEGDTVSAGLDVSYEVDFFGRVGRAIEAARADRDAAQAALDVVRVSVAAETARAYADA
CEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAAGAQLEVAGRSLALSEETAALTRRQLDAGRGTGLDVARAQAQAESARAAVPPLQAQRD
HHCCCEEEECCCEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH
AALFRLSVLTGRPPAEVSPAAAACTAIPQLEAAIPVGDGASLLARRPDVRQAERRLAAAT
HHHEEEEECCCCCCCCCCCHHHHHHHCCCHHHEECCCCCHHHHHCCCCHHHHHHHHHHHH
ARIGVATAALYPRVTLGGSLASVGGEGRDLGDQVSFSVGPLISWSFPNIGLARARIAQAD
HHHHHHHHHHCCCEEECCCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH
AAAQGALAAFEQTTLTALQETETALSAYGRELDRRTALRRARDESAEAVRLARLRQGAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DSFLTVLDAERTLAGLEAQLAQSEALVASNQITLFKALGGGWRTDGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]