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The map label for this gene is xseB

Identifier: 197104376

GI number: 197104376

Start: 1003390

End: 1003632

Strand: Direct

Name: xseB

Synonym: PHZ_c0910

Alternate gene names: 197104376

Gene position: 1003390-1003632 (Clockwise)

Preceding gene: 197104374

Following gene: 197104377

Centisome position: 25.11

GC content: 72.84

Gene sequence:

>243_bases
ATGTCCGAGCCCGCCGACATCGCCGCCATGACCTTCGAGCAGGCGCTCGCCGAGCTGGAGCAGATCGTCGCCCGTCTGGA
GTCGGGCCAGGCGCCGCTGGAGGATTCCATCCGCATGTACGAGCGCGGCGCGGCCCTGAAGGCCCACTGCGAGACGCGGC
TCGAGGCCGCCCGGCTGCGGGTCGAGAAGATCGTCATGGGGGCCGGCGGCGCGCCCGCCAGCGAACCCGCCGAGTTCGGC
TGA

Upstream 100 bases:

>100_bases
ATTGCAGCCTGATGACGGAGTCGCGGCCGCCCGCCTGCCTTAGCGGGTGGACCGGGCCCGGCGCCAGTTCTAGGTTCGTC
GCAGCCTTCCGAGGGGACCC

Downstream 100 bases:

>100_bases
TGGATCTGTCGCGGCGCGTGGCCGAGGCCGCCGACCTGGTGACGGTGGCCCTCGACGAGCTCCTGCCCCGGGGGGAGGGG
CCGGAAAGCCGCCTGACGGA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MSEPADIAAMTFEQALAELEQIVARLESGQAPLEDSIRMYERGAALKAHCETRLEAARLRVEKIVMGAGGAPASEPAEFG

Sequences:

>Translated_80_residues
MSEPADIAAMTFEQALAELEQIVARLESGQAPLEDSIRMYERGAALKAHCETRLEAARLRVEKIVMGAGGAPASEPAEFG
>Mature_79_residues
SEPADIAAMTFEQALAELEQIVARLESGQAPLEDSIRMYERGAALKAHCETRLEAARLRVEKIVMGAGGAPASEPAEFG

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_PHEZH (B4RGV8)

Other databases:

- EMBL:   CP000747
- RefSeq:   YP_002129753.1
- GeneID:   6790403
- GenomeReviews:   CP000747_GR
- KEGG:   pzu:PHZ_c0910
- HOGENOM:   HBG728416
- OMA:   ENANTAD
- ProtClustDB:   PRK00977
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8559; Mature: 8428

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPADIAAMTFEQALAELEQIVARLESGQAPLEDSIRMYERGAALKAHCETRLEAARLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VEKIVMGAGGAPASEPAEFG
HHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SEPADIAAMTFEQALAELEQIVARLESGQAPLEDSIRMYERGAALKAHCETRLEAARLR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
VEKIVMGAGGAPASEPAEFG
HHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA