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The map label for this gene is yhbU [H]

Identifier: 197104146

GI number: 197104146

Start: 738346

End: 739338

Strand: Reverse

Name: yhbU [H]

Synonym: PHZ_c0680

Alternate gene names: 197104146

Gene position: 739338-738346 (Counterclockwise)

Preceding gene: 197104147

Following gene: 197104145

Centisome position: 18.5

GC content: 76.13

Gene sequence:

>993_bases
ATGCCGCCGCTCGAACTCGTCTGTCCCGCCGGGTCGCCCGCCATGCTGCGGGCCGCCGTGGAGGCGGGCGCCGACAGCGT
CTACTGCGGCCTGCGGGACGCCACGAACGCGCGCAACTTCCCGGGCCTGAACTTCTCGCCCGACGAGCTCGCCCGCGAGA
TCGAGTGGGCCCACGGCCGCGGCGCGCGCGTGCTCGTCGCCATCAACACCTTCGCCACGGCCGGCGGGATCGACCCCTGG
CGGGCGGCCATCGACGCCGCCGCCGCGGCCGGCGTCTACGCGGTGATCGTGGCCGACCTGGGCGTCCTCGCCTACGCCCG
CGAGCGCCATCCGGGCCTTCGCCTGCACCTGTCGGTCCAGGCGGCCGCCGGCACGGCCGAGGCGATCGGCTTCTACGCCG
AGGCGTACGGCGTCCGGCGGGTCGTCCTGCCGCGCGTGCTCTCCGCCGCCGAGGTGGCCGAGGTCTGCCGCGGCTCGCCG
GTCGAGATCGAGGCGTTCGTGTTCGGCGGGCTCTGCGTCATGGCCGAGGGGCGCTGCGCCCTCTCCTCGTACGCCACCGG
CCGCTCGCCCAACCTCGCCGGCGTCTGCTCGCCGGCCGAGGCCGTCGCCTTCGATAGGACGTCCCAGGCGCTCACGCCGC
GCCTGTCGGGCCTGGCCATCGACCGCCTGGGGCCCGAGGAGCCGGCCGGCTATCCCACCCTCTGCAAGGGCCGCTTCGAG
GCCGGCGGGGCGACCGGCTACCTGTTCGAGGAGCCGGTCAGCCTGAACGCCATGAGCCTGCTGACGTCGCTGCGCGACGC
GGGCGTGACGGCCGTGAAGGTGGAGGGCCGCCAGCGCGGACGCGCCTACGTCGCGCGCGTCGCCGCGGCGTTCCGCGGGG
CGATCGACGCCCTCGAGCGCGGCGAGGACCTCGCGCCCTGGGAAGGCCGTCTCGCCGATCTCGCCGAGGGCGGCCGCGAG
ACGGCCGGCGCCTACCGGAAGCGCTGGCGATGA

Upstream 100 bases:

>100_bases
CTCGCCGACCTGCTGCCCGGCCCGGCGCCCGCGCGGCGCCTCGCGGCCCTGGGCCTCGGCCGCCTGCTGCGCAGCCGCCG
CCCGGCGACGGTCGCCTGAC

Downstream 100 bases:

>100_bases
GCGGGCGCCTGGAGATCACCGTCGGCCCCCTGCTGTTCAACTGGCCGGCCGAGGCGGTGCGGACGTTCTACCGCCGCGTC
GCGGACGATCCGGCCGTCGA

Product: collagenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MPPLELVCPAGSPAMLRAAVEAGADSVYCGLRDATNARNFPGLNFSPDELAREIEWAHGRGARVLVAINTFATAGGIDPW
RAAIDAAAAAGVYAVIVADLGVLAYARERHPGLRLHLSVQAAAGTAEAIGFYAEAYGVRRVVLPRVLSAAEVAEVCRGSP
VEIEAFVFGGLCVMAEGRCALSSYATGRSPNLAGVCSPAEAVAFDRTSQALTPRLSGLAIDRLGPEEPAGYPTLCKGRFE
AGGATGYLFEEPVSLNAMSLLTSLRDAGVTAVKVEGRQRGRAYVARVAAAFRGAIDALERGEDLAPWEGRLADLAEGGRE
TAGAYRKRWR

Sequences:

>Translated_330_residues
MPPLELVCPAGSPAMLRAAVEAGADSVYCGLRDATNARNFPGLNFSPDELAREIEWAHGRGARVLVAINTFATAGGIDPW
RAAIDAAAAAGVYAVIVADLGVLAYARERHPGLRLHLSVQAAAGTAEAIGFYAEAYGVRRVVLPRVLSAAEVAEVCRGSP
VEIEAFVFGGLCVMAEGRCALSSYATGRSPNLAGVCSPAEAVAFDRTSQALTPRLSGLAIDRLGPEEPAGYPTLCKGRFE
AGGATGYLFEEPVSLNAMSLLTSLRDAGVTAVKVEGRQRGRAYVARVAAAFRGAIDALERGEDLAPWEGRLADLAEGGRE
TAGAYRKRWR
>Mature_329_residues
PPLELVCPAGSPAMLRAAVEAGADSVYCGLRDATNARNFPGLNFSPDELAREIEWAHGRGARVLVAINTFATAGGIDPWR
AAIDAAAAAGVYAVIVADLGVLAYARERHPGLRLHLSVQAAAGTAEAIGFYAEAYGVRRVVLPRVLSAAEVAEVCRGSPV
EIEAFVFGGLCVMAEGRCALSSYATGRSPNLAGVCSPAEAVAFDRTSQALTPRLSGLAIDRLGPEEPAGYPTLCKGRFEA
GGATGYLFEEPVSLNAMSLLTSLRDAGVTAVKVEGRQRGRAYVARVAAAFRGAIDALERGEDLAPWEGRLADLAEGGRET
AGAYRKRWR

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=331, Percent_Identity=48.3383685800604, Blast_Score=318, Evalue=3e-88,
Organism=Escherichia coli, GI1788397, Length=334, Percent_Identity=31.1377245508982, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87081910, Length=307, Percent_Identity=30.2931596091205, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 34588; Mature: 34456

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPLELVCPAGSPAMLRAAVEAGADSVYCGLRDATNARNFPGLNFSPDELAREIEWAHGR
CCCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
GARVLVAINTFATAGGIDPWRAAIDAAAAAGVYAVIVADLGVLAYARERHPGLRLHLSVQ
CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
AAAGTAEAIGFYAEAYGVRRVVLPRVLSAAEVAEVCRGSPVEIEAFVFGGLCVMAEGRCA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCH
LSSYATGRSPNLAGVCSPAEAVAFDRTSQALTPRLSGLAIDRLGPEEPAGYPTLCKGRFE
HHHCCCCCCCCCCEECCCHHHHHHCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
AGGATGYLFEEPVSLNAMSLLTSLRDAGVTAVKVEGRQRGRAYVARVAAAFRGAIDALER
CCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC
GEDLAPWEGRLADLAEGGRETAGAYRKRWR
CCCCCCCCCHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PPLELVCPAGSPAMLRAAVEAGADSVYCGLRDATNARNFPGLNFSPDELAREIEWAHGR
CCCEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
GARVLVAINTFATAGGIDPWRAAIDAAAAAGVYAVIVADLGVLAYARERHPGLRLHLSVQ
CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
AAAGTAEAIGFYAEAYGVRRVVLPRVLSAAEVAEVCRGSPVEIEAFVFGGLCVMAEGRCA
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEECCCCH
LSSYATGRSPNLAGVCSPAEAVAFDRTSQALTPRLSGLAIDRLGPEEPAGYPTLCKGRFE
HHHCCCCCCCCCCEECCCHHHHHHCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCC
AGGATGYLFEEPVSLNAMSLLTSLRDAGVTAVKVEGRQRGRAYVARVAAAFRGAIDALER
CCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC
GEDLAPWEGRLADLAEGGRETAGAYRKRWR
CCCCCCCCCHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]