| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197104111
Identifier: 197104111
GI number: 197104111
Start: 693156
End: 694259
Strand: Direct
Name: 197104111
Synonym: PHZ_c0645
Alternate gene names: NA
Gene position: 693156-694259 (Clockwise)
Preceding gene: 197104109
Following gene: 197104116
Centisome position: 17.35
GC content: 74.91
Gene sequence:
>1104_bases TTGCGCCGCGTCAAACCCCCGGCCGCGGCGATACCGGAAGGTGCAGGCGTGCCTGCCGACACAGAGACCCGCGCCGACCC CGGCCTGGCCGCGAAGGTCGACTTCCTGAGCCGTCCGGCCGCCTATGCCGAGGGACCGGCGCAGGTGAGCCGGCGCGAGA CCCACATGTCCTGGGTCTTCTTCCTGGACGGGACGGTCTACAAGCTGAAGAAGCCGGTCCGCTTCCCCTACCTCGACTTC TCCACCCTCGCGCGGCGCGAGGCGGCCTGCCGCGCCGAGGTCGCGCTGAACCAGCGCCTGGCGCCGGGGATCTACCGCGG CGTCGTCCCGCTGGTGCTGCGGGACGGCCGCCTGGCGCTGGGGGGCGAGGGGCCGGTGGTCGACTGGCTGGTGCGGATGG ACAGGTTCGACCAGGCCCGCACGCTGGAGGCGCGGTTGCTGGCGGATGGGATCGCGGACGGCGAGGCCGACGCCCTGGCC GACGCGCTGGCCAGGTTCTACCGCACCACGCGCCGGATCCCGACGCAGCCTGCGGCCTATCTGAAGCGCATCGGGGACGC GCTGGCCTATCACCGCCGGGTGCTGCTGGAGCCCCGGCTGGGACTGCCGGCGGGACAGGTGCGCCATGTGCTGGCGGTGC AGCACCGGTTCCTGCGGGTGCGGGGCGGCCTGCTCGCCGCGCGCGCCGGGCGGGGCCGCATCCTGGACGCCCACGGCGAC CTGCGGCCCGAGCACATCTGGCTGGGGCCGCCGATCAAGATCATCGACCGGCTGGAGTTCAGCGCCGAGCTGCGCGCGGT GGACCCGCTGGACGAGCTGGCCTTCCTGGACCTGGAGATGGAGCGCCTGGGCGCGGCGGCGGCGGGCGCCCGGGTCCGCC GGCGGGCGGTCGCGCGGCTGGGCGAGCGGGCGGCGCCCGAGCTGCACCTGTTCTACCGCTGCCACCGGGCCACGCTGCGC GCGCGGCTGGCCATCGCCCATCTGCTGGAGCCGAACCCGCGCACCCCCGAGAAATGGCCGCGGCAGGCGAGGGCCTACCT GGCGCTCGCGGCCCGCGACGCCCGCCAGTTGGAGCGGCGGCTCAGAACACCATCAGGTCGGTAA
Upstream 100 bases:
>100_bases CGCTCGACGGCCTGCGCCACGGCCTCCTGAAGGGCCTTGTCGTCCATGGGATGCCTCGCAAACTGGAAGCCCCAGGCTGC GCCGCCGGGCGCTGGACGCA
Downstream 100 bases:
>100_bases GCGCCTCATCGCAGGCCAGCCGCCGGATCGCCTCGGCCAGCAGCGGCGCGCTGGCGAGCGCCTCGACCTTGGCCTGCAGC GGCGATCCGGCGATGCGGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 367; Mature: 367
Protein sequence:
>367_residues MRRVKPPAAAIPEGAGVPADTETRADPGLAAKVDFLSRPAAYAEGPAQVSRRETHMSWVFFLDGTVYKLKKPVRFPYLDF STLARREAACRAEVALNQRLAPGIYRGVVPLVLRDGRLALGGEGPVVDWLVRMDRFDQARTLEARLLADGIADGEADALA DALARFYRTTRRIPTQPAAYLKRIGDALAYHRRVLLEPRLGLPAGQVRHVLAVQHRFLRVRGGLLAARAGRGRILDAHGD LRPEHIWLGPPIKIIDRLEFSAELRAVDPLDELAFLDLEMERLGAAAAGARVRRRAVARLGERAAPELHLFYRCHRATLR ARLAIAHLLEPNPRTPEKWPRQARAYLALAARDARQLERRLRTPSGR
Sequences:
>Translated_367_residues MRRVKPPAAAIPEGAGVPADTETRADPGLAAKVDFLSRPAAYAEGPAQVSRRETHMSWVFFLDGTVYKLKKPVRFPYLDF STLARREAACRAEVALNQRLAPGIYRGVVPLVLRDGRLALGGEGPVVDWLVRMDRFDQARTLEARLLADGIADGEADALA DALARFYRTTRRIPTQPAAYLKRIGDALAYHRRVLLEPRLGLPAGQVRHVLAVQHRFLRVRGGLLAARAGRGRILDAHGD LRPEHIWLGPPIKIIDRLEFSAELRAVDPLDELAFLDLEMERLGAAAAGARVRRRAVARLGERAAPELHLFYRCHRATLR ARLAIAHLLEPNPRTPEKWPRQARAYLALAARDARQLERRLRTPSGR >Mature_367_residues MRRVKPPAAAIPEGAGVPADTETRADPGLAAKVDFLSRPAAYAEGPAQVSRRETHMSWVFFLDGTVYKLKKPVRFPYLDF STLARREAACRAEVALNQRLAPGIYRGVVPLVLRDGRLALGGEGPVVDWLVRMDRFDQARTLEARLLADGIADGEADALA DALARFYRTTRRIPTQPAAYLKRIGDALAYHRRVLLEPRLGLPAGQVRHVLAVQHRFLRVRGGLLAARAGRGRILDAHGD LRPEHIWLGPPIKIIDRLEFSAELRAVDPLDELAFLDLEMERLGAAAAGARVRRRAVARLGERAAPELHLFYRCHRATLR ARLAIAHLLEPNPRTPEKWPRQARAYLALAARDARQLERRLRTPSGR
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 40949; Mature: 40949
Theoretical pI: Translated: 11.39; Mature: 11.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVKPPAAAIPEGAGVPADTETRADPGLAAKVDFLSRPAAYAEGPAQVSRRETHMSWVF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHCCCHHCCCHHHHHHHHHHEEEEE FLDGTVYKLKKPVRFPYLDFSTLARREAACRAEVALNQRLAPGIYRGVVPLVLRDGRLAL EECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHEEECCCEEE GGEGPVVDWLVRMDRFDQARTLEARLLADGIADGEADALADALARFYRTTRRIPTQPAAY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH LKRIGDALAYHRRVLLEPRLGLPAGQVRHVLAVQHRFLRVRGGLLAARAGRGRILDAHGD HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEECCCC LRPEHIWLGPPIKIIDRLEFSAELRAVDPLDELAFLDLEMERLGAAAAGARVRRRAVARL CCCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH GERAAPELHLFYRCHRATLRARLAIAHLLEPNPRTPEKWPRQARAYLALAARDARQLERR HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LRTPSGR HCCCCCC >Mature Secondary Structure MRRVKPPAAAIPEGAGVPADTETRADPGLAAKVDFLSRPAAYAEGPAQVSRRETHMSWVF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHCCCHHCCCHHHHHHHHHHEEEEE FLDGTVYKLKKPVRFPYLDFSTLARREAACRAEVALNQRLAPGIYRGVVPLVLRDGRLAL EECCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHEEECCCEEE GGEGPVVDWLVRMDRFDQARTLEARLLADGIADGEADALADALARFYRTTRRIPTQPAAY CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH LKRIGDALAYHRRVLLEPRLGLPAGQVRHVLAVQHRFLRVRGGLLAARAGRGRILDAHGD HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEECCCC LRPEHIWLGPPIKIIDRLEFSAELRAVDPLDELAFLDLEMERLGAAAAGARVRRRAVARL CCCCEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH GERAAPELHLFYRCHRATLRARLAIAHLLEPNPRTPEKWPRQARAYLALAARDARQLERR HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH LRTPSGR HCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]