Click here to switch to the map view.

The map label for this gene is ubiD [H]

Identifier: 197103987

GI number: 197103987

Start: 546266

End: 547792

Strand: Reverse

Name: ubiD [H]

Synonym: PHZ_c0521

Alternate gene names: 197103987

Gene position: 547792-546266 (Counterclockwise)

Preceding gene: 197103988

Following gene: 197103986

Centisome position: 13.71

GC content: 69.29

Gene sequence:

>1527_bases
ATGGCTTACCGATCGCTGCGCGACTTCATCGACCGCCTGGAAGCCGCGGGCGAGCTGGTCCGGGTCGCCGAACCCGTCTC
CTCGGTGCTCGAGATGACCGAGATCCAGCGGCGGCTGCTGGCCGCCGGCGGGCCGGCGGTGCTGTTCGAGAACGTCATCC
GCGCCGACGGCCAGCGCTCGGCCATGCCGTGCCTCGTCAACCTCTTCGGCACGGTCAAGCGCGTGGCCATGGGCGTGACG
CTGGAGGGCCGCGAACGGGCGACGGCGGCCGATCTGCGCGAGGTGGGCGAGCTGCTGGCCTTCCTGCGCGCGCCCGAGCC
GCCGCGCGGCCTGAAGGACGCCATGGGCATGCTGCCCCTCGCCAAGACGGTGATGAGCATGCGGCCCAACACGGTGAAGA
AGGCGCCGGTGCAGGAGGTCGTCCTCACGGGCGACCAGATCGACCTGACGCAACTGCCGATCCAGACCTGCTGGCCGGGC
GAGCCCGCGCCGCTGATCACCTGGCCGCTGGTGGTCACCAAGGGCCCCTCCACCGACCGCGAAGACGACTACAACCTCGG
CATCTACCGCATGCAGGTGCTTGGGAAGGACCGCACCATCATGCGCTGGCTGGCCCACCGAGGCGGCGCCCAGCACCACC
GCCGCTGGAAGGCGGCCGGCAGGCCCGAGCCCCTGCCCGCCTGCGCGGTGATCGGCGCCGATCCGGGGACCATCCTGGCC
GCCGTGACCCCGGTGCCGGACACGCTGTCGGAGTATCAGTTCGCCGGTTTGATGCGCGGGGCCAAGGTGGACCTCGTGCC
GGCCAAGACCGTGCCGCTGATGGTGCCGGCCCAGGCCGAGATCGTGCTGGAGGGCCACGTCCTCCTGGACGAGTACGCCG
ACGAGGGGCCATACGGCGACCACACGGGGTACTACAATTCGGTCGAGCGCTTCCCGGTGTTCCAGGTCAGCGCGATCACC
ATGCGCCGCGACCCGATCTACCTGACCACCTTCACCGGCCGGCCGCCGGACGAGCCCAGCGTGCTGGGCGAGGCGCTGAA
CGAGGTGTTCATCCCGCTGATCCGCCAGCAGTTCCCAGAGATCGTCGACTTCTGGCTGCCGCCCGAGGGCTGCAGCTACC
GGATCGCCGTGGTGTCGATGAAGAAGGCCTACCCCGGCCACGCCAAGCGCGTGATGATGGGCGTCTGGAGCTACCTTCGC
CAGTTCATGTACACCAAGTGGGTGATCGTCGTGGACGATGACATCGACGCCCGCGACTGGAAGGACGTGATGTGGGCCAT
CTCCACGCGGATGGACCCGGCCCGGGACGTCACGCTCGTCGAGAACACCCCCATCGACTACCTGGACTTCGCCAGCCCCG
AGAGCGGCCTCGGCTCCAAGATCGGCCTCGACGCCACCAACAAGTGGCCCCCCGAGACCAAGCGGGAGTGGGGCGAGAAG
CTGTTCATGGATCCCGCCGTGGTTGAGGCGGTGACCGAAAAGTGGGCTAAGCTCGGCCTTCCCGGCGACGGCCGGCCCGT
GGACTGA

Upstream 100 bases:

>100_bases
GATCTTCGGCGGCAGGTCGTCGAGGTCGAGGCGCTTCATGGGCCCATCCTAGACCCGCCGGGGGGCTGCGGGTAAACCGC
CGGCCAAGTGTGGAGGAACG

Downstream 100 bases:

>100_bases
GCACTCCAAGGAACCCGATGGACCTGACGCCCGCCGCCCACGCCGCCGCCCTCTGGGCCGGCCTGCACCTCGTCCTCCTG
CTGGTCCTGTCGGTGCTGGT

Product: 3-polyprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MAYRSLRDFIDRLEAAGELVRVAEPVSSVLEMTEIQRRLLAAGGPAVLFENVIRADGQRSAMPCLVNLFGTVKRVAMGVT
LEGRERATAADLREVGELLAFLRAPEPPRGLKDAMGMLPLAKTVMSMRPNTVKKAPVQEVVLTGDQIDLTQLPIQTCWPG
EPAPLITWPLVVTKGPSTDREDDYNLGIYRMQVLGKDRTIMRWLAHRGGAQHHRRWKAAGRPEPLPACAVIGADPGTILA
AVTPVPDTLSEYQFAGLMRGAKVDLVPAKTVPLMVPAQAEIVLEGHVLLDEYADEGPYGDHTGYYNSVERFPVFQVSAIT
MRRDPIYLTTFTGRPPDEPSVLGEALNEVFIPLIRQQFPEIVDFWLPPEGCSYRIAVVSMKKAYPGHAKRVMMGVWSYLR
QFMYTKWVIVVDDDIDARDWKDVMWAISTRMDPARDVTLVENTPIDYLDFASPESGLGSKIGLDATNKWPPETKREWGEK
LFMDPAVVEAVTEKWAKLGLPGDGRPVD

Sequences:

>Translated_508_residues
MAYRSLRDFIDRLEAAGELVRVAEPVSSVLEMTEIQRRLLAAGGPAVLFENVIRADGQRSAMPCLVNLFGTVKRVAMGVT
LEGRERATAADLREVGELLAFLRAPEPPRGLKDAMGMLPLAKTVMSMRPNTVKKAPVQEVVLTGDQIDLTQLPIQTCWPG
EPAPLITWPLVVTKGPSTDREDDYNLGIYRMQVLGKDRTIMRWLAHRGGAQHHRRWKAAGRPEPLPACAVIGADPGTILA
AVTPVPDTLSEYQFAGLMRGAKVDLVPAKTVPLMVPAQAEIVLEGHVLLDEYADEGPYGDHTGYYNSVERFPVFQVSAIT
MRRDPIYLTTFTGRPPDEPSVLGEALNEVFIPLIRQQFPEIVDFWLPPEGCSYRIAVVSMKKAYPGHAKRVMMGVWSYLR
QFMYTKWVIVVDDDIDARDWKDVMWAISTRMDPARDVTLVENTPIDYLDFASPESGLGSKIGLDATNKWPPETKREWGEK
LFMDPAVVEAVTEKWAKLGLPGDGRPVD
>Mature_507_residues
AYRSLRDFIDRLEAAGELVRVAEPVSSVLEMTEIQRRLLAAGGPAVLFENVIRADGQRSAMPCLVNLFGTVKRVAMGVTL
EGRERATAADLREVGELLAFLRAPEPPRGLKDAMGMLPLAKTVMSMRPNTVKKAPVQEVVLTGDQIDLTQLPIQTCWPGE
PAPLITWPLVVTKGPSTDREDDYNLGIYRMQVLGKDRTIMRWLAHRGGAQHHRRWKAAGRPEPLPACAVIGADPGTILAA
VTPVPDTLSEYQFAGLMRGAKVDLVPAKTVPLMVPAQAEIVLEGHVLLDEYADEGPYGDHTGYYNSVERFPVFQVSAITM
RRDPIYLTTFTGRPPDEPSVLGEALNEVFIPLIRQQFPEIVDFWLPPEGCSYRIAVVSMKKAYPGHAKRVMMGVWSYLRQ
FMYTKWVIVVDDDIDARDWKDVMWAISTRMDPARDVTLVENTPIDYLDFASPESGLGSKIGLDATNKWPPETKREWGEKL
FMDPAVVEAVTEKWAKLGLPGDGRPVD

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=505, Percent_Identity=61.1881188118812, Blast_Score=625, Evalue=1e-180,
Organism=Saccharomyces cerevisiae, GI6320748, Length=448, Percent_Identity=26.3392857142857, Blast_Score=110, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 56472; Mature: 56341

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYRSLRDFIDRLEAAGELVRVAEPVSSVLEMTEIQRRLLAAGGPAVLFENVIRADGQRS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
AMPCLVNLFGTVKRVAMGVTLEGRERATAADLREVGELLAFLRAPEPPRGLKDAMGMLPL
HHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AKTVMSMRPNTVKKAPVQEVVLTGDQIDLTQLPIQTCWPGEPAPLITWPLVVTKGPSTDR
HHHHHHCCCCCCHHCCHHHHHCCCCCEEHHHCCHHHCCCCCCCCEEEEEEEEECCCCCCC
EDDYNLGIYRMQVLGKDRTIMRWLAHRGGAQHHRRWKAAGRPEPLPACAVIGADPGTILA
CCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEE
AVTPVPDTLSEYQFAGLMRGAKVDLVPAKTVPLMVPAQAEIVLEGHVLLDEYADEGPYGD
EECCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCEEEEEECCEEEHHHCCCCCCCC
HTGYYNSVERFPVFQVSAITMRRDPIYLTTFTGRPPDEPSVLGEALNEVFIPLIRQQFPE
CCCCCCCHHHCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IVDFWLPPEGCSYRIAVVSMKKAYPGHAKRVMMGVWSYLRQFMYTKWVIVVDDDIDARDW
HHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHH
KDVMWAISTRMDPARDVTLVENTPIDYLDFASPESGLGSKIGLDATNKWPPETKREWGEK
HHHHHHHHHCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LFMDPAVVEAVTEKWAKLGLPGDGRPVD
HHCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AYRSLRDFIDRLEAAGELVRVAEPVSSVLEMTEIQRRLLAAGGPAVLFENVIRADGQRS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
AMPCLVNLFGTVKRVAMGVTLEGRERATAADLREVGELLAFLRAPEPPRGLKDAMGMLPL
HHHHHHHHHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AKTVMSMRPNTVKKAPVQEVVLTGDQIDLTQLPIQTCWPGEPAPLITWPLVVTKGPSTDR
HHHHHHCCCCCCHHCCHHHHHCCCCCEEHHHCCHHHCCCCCCCCEEEEEEEEECCCCCCC
EDDYNLGIYRMQVLGKDRTIMRWLAHRGGAQHHRRWKAAGRPEPLPACAVIGADPGTILA
CCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEE
AVTPVPDTLSEYQFAGLMRGAKVDLVPAKTVPLMVPAQAEIVLEGHVLLDEYADEGPYGD
EECCCCHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCEEEEEECCEEEHHHCCCCCCCC
HTGYYNSVERFPVFQVSAITMRRDPIYLTTFTGRPPDEPSVLGEALNEVFIPLIRQQFPE
CCCCCCCHHHCCEEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
IVDFWLPPEGCSYRIAVVSMKKAYPGHAKRVMMGVWSYLRQFMYTKWVIVVDDDIDARDW
HHHHCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHH
KDVMWAISTRMDPARDVTLVENTPIDYLDFASPESGLGSKIGLDATNKWPPETKREWGEK
HHHHHHHHHCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
LFMDPAVVEAVTEKWAKLGLPGDGRPVD
HHCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA