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The map label for this gene is ompA [H]

Identifier: 197103803

GI number: 197103803

Start: 336202

End: 337434

Strand: Direct

Name: ompA [H]

Synonym: PHZ_c0337

Alternate gene names: 197103803

Gene position: 336202-337434 (Clockwise)

Preceding gene: 197103802

Following gene: 197103805

Centisome position: 8.41

GC content: 69.59

Gene sequence:

>1233_bases
ATGGCCGCACCACCTGAGGGCAACGAGAGGGCTCTGATTATGAAGTTGAAACTCCTGGCAGGGGCTGCGATGGCCGCGGC
CTTCGCCGCGTCCGCCGCCCAGGCGCAAGTCGGCTGGTACGGCGCGGTCGATCTCGGGTACCACTGGCCCGAGCAGTTCG
AGATGGACTCCTCGAACAACGCGCCGAACGGCAATCCCTACGTCTGGGATTTCAATCAGGAAGAAGACTGGGCCGGCTTC
GCCCGTCTCGGCTATCAGGTGACCGACAACTGGCGCGTCGAGCTCGAGCTCGGCTACCGCGGCGGCGACCTGGAGTCGGT
GCGCGGCGGCTCGAACCAGGCGGTCCTGGGCCTCTGCACCCCCGGCGTGGTGCGCACCGCGGCGGCCCCGACCTGCGGCT
CGCCCGACGGTGACGTCACCTCGTGGACCGTGATGGGCAATGTCATCTACGACATCATGCCCGGCTCCTCGATCAACCCG
TTCATCGGCGGCGGCATCGGCATCAACCACGTCTCCATGGAGACGCTGGGCCAGTTCTCGAACGTTCCCGGGATCACCGC
GGCCAACCCGGCGATCCAGAACCTGACGATCGACGACGACGACACCGCCTTCGCCTGGCAGCTGCTGGCCGGCGTGGCGT
GGCGCGCCACCGATCGCCTGAACGTCGACCTGACCTACCGCTACCTCGGCGGTTCGGATCTCGACTTCGACTCGACCGGC
TCGAACGCCGGCGGCCTGCAGCCGGGCGTGTTCAGCGGCGAATACCGCGACTCGTCGGTGACCCTGGGCCTGCGGTACTC
GTTCGCGGCCCCGCCGCCCCCGCCGCCGCCGCCCCCGCCGCCGCCGCCTCCCCCGCCGCCGCCTCCGCCCCCGCCGCCGC
CTCCGGCGCCGGCCTACGAGGCCAAGCAGTTCATCGTCTACTTCCCGTTCGATCAGTACGTGCTGACGCCGGAAGCCCAG
CAGGTGGTCACGGAAGCCGCCAACTACGCCAAGGGCGGCAACGCCACCCGCGTCGTGGTGGTCGGCCACGCCGACACCTC
GGGCTCGCAGGCCTACAACGTGCGTCTGTCCGAGCGCCGCGCGAAGGCGGTCGCCGACGCCCTGGTGGGCTCCGGCGTGA
ACCAGACCTCGCTGTCGGTCGACTGGAAGGGCGAGACCATGCCTGCGGTCGCCACCGGCGACGGCGTCAAGGAACCGCTG
AACCGCCGTTCGACGATCGACATCAACTTCTGA

Upstream 100 bases:

>100_bases
TCCTCGCCGAAGCTGGAAAGGGGGCCAGATTGGGGTCGGAGTGTGGCTTCGGCGACACTTACGCATCGCATCGGCCTTGT
TATAACGGCGGCTGGGTCAA

Downstream 100 bases:

>100_bases
TCTCGATCGCCGGCTTCGGTCGGACACTAGGCGAGGGCCCGGCGGAAACGCCGGGCCCTTTGCTTTTGGGGAAGGCGGGC
GTTCGCTCGCGGCTGGAGAT

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MAAPPEGNERALIMKLKLLAGAAMAAAFAASAAQAQVGWYGAVDLGYHWPEQFEMDSSNNAPNGNPYVWDFNQEEDWAGF
ARLGYQVTDNWRVELELGYRGGDLESVRGGSNQAVLGLCTPGVVRTAAAPTCGSPDGDVTSWTVMGNVIYDIMPGSSINP
FIGGGIGINHVSMETLGQFSNVPGITAANPAIQNLTIDDDDTAFAWQLLAGVAWRATDRLNVDLTYRYLGGSDLDFDSTG
SNAGGLQPGVFSGEYRDSSVTLGLRYSFAAPPPPPPPPPPPPPPPPPPPPPPPPPAPAYEAKQFIVYFPFDQYVLTPEAQ
QVVTEAANYAKGGNATRVVVVGHADTSGSQAYNVRLSERRAKAVADALVGSGVNQTSLSVDWKGETMPAVATGDGVKEPL
NRRSTIDINF

Sequences:

>Translated_410_residues
MAAPPEGNERALIMKLKLLAGAAMAAAFAASAAQAQVGWYGAVDLGYHWPEQFEMDSSNNAPNGNPYVWDFNQEEDWAGF
ARLGYQVTDNWRVELELGYRGGDLESVRGGSNQAVLGLCTPGVVRTAAAPTCGSPDGDVTSWTVMGNVIYDIMPGSSINP
FIGGGIGINHVSMETLGQFSNVPGITAANPAIQNLTIDDDDTAFAWQLLAGVAWRATDRLNVDLTYRYLGGSDLDFDSTG
SNAGGLQPGVFSGEYRDSSVTLGLRYSFAAPPPPPPPPPPPPPPPPPPPPPPPPPAPAYEAKQFIVYFPFDQYVLTPEAQ
QVVTEAANYAKGGNATRVVVVGHADTSGSQAYNVRLSERRAKAVADALVGSGVNQTSLSVDWKGETMPAVATGDGVKEPL
NRRSTIDINF
>Mature_409_residues
AAPPEGNERALIMKLKLLAGAAMAAAFAASAAQAQVGWYGAVDLGYHWPEQFEMDSSNNAPNGNPYVWDFNQEEDWAGFA
RLGYQVTDNWRVELELGYRGGDLESVRGGSNQAVLGLCTPGVVRTAAAPTCGSPDGDVTSWTVMGNVIYDIMPGSSINPF
IGGGIGINHVSMETLGQFSNVPGITAANPAIQNLTIDDDDTAFAWQLLAGVAWRATDRLNVDLTYRYLGGSDLDFDSTGS
NAGGLQPGVFSGEYRDSSVTLGLRYSFAAPPPPPPPPPPPPPPPPPPPPPPPPPAPAYEAKQFIVYFPFDQYVLTPEAQQ
VVTEAANYAKGGNATRVVVVGHADTSGSQAYNVRLSERRAKAVADALVGSGVNQTSLSVDWKGETMPAVATGDGVKEPLN
RRSTIDINF

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=102, Percent_Identity=37.2549019607843, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 43366; Mature: 43234

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPPEGNERALIMKLKLLAGAAMAAAFAASAAQAQVGWYGAVDLGYHWPEQFEMDSSNN
CCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCCCC
APNGNPYVWDFNQEEDWAGFARLGYQVTDNWRVELELGYRGGDLESVRGGSNQAVLGLCT
CCCCCCEEEECCCCCCCCCHHHCCEEECCCEEEEEEECCCCCCHHHCCCCCCCEEEEEEC
PGVVRTAAAPTCGSPDGDVTSWTVMGNVIYDIMPGSSINPFIGGGIGINHVSMETLGQFS
CCHHHHCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEECHHHHHHHC
NVPGITAANPAIQNLTIDDDDTAFAWQLLAGVAWRATDRLNVDLTYRYLGGSDLDFDSTG
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEECCCEEEEEEEEEEECCCCCCCCCCC
SNAGGLQPGVFSGEYRDSSVTLGLRYSFAAPPPPPPPPPPPPPPPPPPPPPPPPPAPAYE
CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AKQFIVYFPFDQYVLTPEAQQVVTEAANYAKGGNATRVVVVGHADTSGSQAYNVRLSERR
CCEEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEHHHH
AKAVADALVGSGVNQTSLSVDWKGETMPAVATGDGVKEPLNRRSTIDINF
HHHHHHHHHCCCCCCCEEEEEECCCCCCEEECCCCCHHHHCCCCEEEECC
>Mature Secondary Structure 
AAPPEGNERALIMKLKLLAGAAMAAAFAASAAQAQVGWYGAVDLGYHWPEQFEMDSSNN
CCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCCCC
APNGNPYVWDFNQEEDWAGFARLGYQVTDNWRVELELGYRGGDLESVRGGSNQAVLGLCT
CCCCCCEEEECCCCCCCCCHHHCCEEECCCEEEEEEECCCCCCHHHCCCCCCCEEEEEEC
PGVVRTAAAPTCGSPDGDVTSWTVMGNVIYDIMPGSSINPFIGGGIGINHVSMETLGQFS
CCHHHHCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCEECHHHHHHHC
NVPGITAANPAIQNLTIDDDDTAFAWQLLAGVAWRATDRLNVDLTYRYLGGSDLDFDSTG
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHEECCCEEEEEEEEEEECCCCCCCCCCC
SNAGGLQPGVFSGEYRDSSVTLGLRYSFAAPPPPPPPPPPPPPPPPPPPPPPPPPAPAYE
CCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AKQFIVYFPFDQYVLTPEAQQVVTEAANYAKGGNATRVVVVGHADTSGSQAYNVRLSERR
CCEEEEEECCCCEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEEEHHHH
AKAVADALVGSGVNQTSLSVDWKGETMPAVATGDGVKEPLNRRSTIDINF
HHHHHHHHHCCCCCCCEEEEEECCCCCCEEECCCCCHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]