| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is 197103754
Identifier: 197103754
GI number: 197103754
Start: 280354
End: 281682
Strand: Direct
Name: 197103754
Synonym: PHZ_c0288
Alternate gene names: NA
Gene position: 280354-281682 (Clockwise)
Preceding gene: 197103753
Following gene: 197103762
Centisome position: 7.02
GC content: 72.99
Gene sequence:
>1329_bases TTGCGGATGACGAAGCTCTTCTGCTCGGCCGCCGCCCTGGCGCTGCTCGCCGTCGCCGCCCCCGCTCAGGCCCAGTCGCC TCAGACCCCGCAGATCGATCCGAAGATCGCCGCCCGCGTGGACCGGGTGCTGGCCCGAACGCCGCTGATCGACGGCCACA ACGACCTGCCCTGGGCGGTCCGCGAGCGGTTCGAGAGCAAGCTGGACCGCGCGGACCTGTCGAAGGACACCGCCGCCCTG CCGAAGCCGGCGGACGAGCCGCCGCTGATGACCGACATCCCGCGCCTGAAGGCCGGCCGGGTCGGCGGCCAGTTCTGGTC GGTGTGGATCCCGGCCACCCTCGACGGGCCCGAGGCGGTGCAGACGACCCTCGAGCAGATCGACATCGTCAAGCAGATGG CCGCCCGCTGGCCGGCCGACCTGGAGATGGCCTACACGGCGGCCGACATCGTGCGCATCCACAAGGCGGGCAAGGTCGCC TCGCTGGTGGGAATCGAGGGCGGCCACCAGATCAACGACAGCCTGCCGGCGCTGCGCCAGATGTACGACGCCGGCGCGCG CTATATGACCCTGACCCACTCGCGGGCGACCCGCTGGGCCGACTCGGCCACCGACAATCCGCGCCACGACGGCCTGTCGC CCTTCGGCGAGGAGGTGGTCCGCGAGATGAACCGCATGGGCATGCTGGTGGACCTGAGCCACGTCTCGGAGGCCGGCATG AAGGACGCCCTGCGCGTCTCGGCCGCGCCGGTGATCTTCTCGCACTCGGGCGCCCGCGCCGTGGCCGACCATCCGCGCAA CGTCTCGGACGAGGTGCTGGCCCTGCTGAAGGCCAACCGCGGCGTGGTGATGGTCAACTTCGCCACCCTCTATGCCTCGG ACGAGATGGTGAAGTGGAGCGCCGACCGGGCGGCCGAGCGGGCCCGCTACAACGCCCCGCCGTTCGCCGGCCTCTACATC GGCCAGCCCGAGCGCGCCGCCGCGGCCCTGGCGGCCTGGGAGGCGGCCCATCCGCGACCGGTGGTGACCGTGGGCATGAT CGCCGACCACGTGGAGCATATCGTGCGGGTCTGCGGCGCGGACTGCGTGGGGATCGGCTCGGACTTCGACGGCATCCCGG ACACGCCCGCGGGGCTGGAGGGCGTGGACCGGTTTCCCGTGCTGCTGGCCGAGCTCGCCCGCCGCGGCTGGAGCGACGCC GACCTCGGCAAGCTGGCCGGCGGCAACGTCCTGCGGGTCATGCGCGAGGCCGAGGCGGTCGCGCGGCGCCTGCAGGCCGA GCGGCCGCCCTCCAGCGCCACCCTCGCCGAGCTGGACGGGAAGCGGTGA
Upstream 100 bases:
>100_bases ACCGAGCAGGCCGCCCTGGACGCGGCCGGGATCGAGACCGAGATCCTGCCGATCGCCCGCTGAGCACGCCGTTGACCGCC ACGGCCATGCTTGCGAAGCC
Downstream 100 bases:
>100_bases TCCTTCCCCCGCAAGGGGGAGAAGGGGGCTAGGCGTCCAGCGGCCGGCCCCTGGTCTCCTTCAGGAACAGGAAGCAGATC ACGACCGACAGCGCCGTGAA
Product: dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 442; Mature: 442
Protein sequence:
>442_residues MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAVRERFESKLDRADLSKDTAAL PKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAVQTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVA SLVGIEGGHQINDSLPALRQMYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWSADRAAERARYNAPPFAGLYI GQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGADCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDA DLGKLAGGNVLRVMREAEAVARRLQAERPPSSATLAELDGKR
Sequences:
>Translated_442_residues MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAVRERFESKLDRADLSKDTAAL PKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAVQTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVA SLVGIEGGHQINDSLPALRQMYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWSADRAAERARYNAPPFAGLYI GQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGADCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDA DLGKLAGGNVLRVMREAEAVARRLQAERPPSSATLAELDGKR >Mature_442_residues MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAVRERFESKLDRADLSKDTAAL PKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAVQTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVA SLVGIEGGHQINDSLPALRQMYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWSADRAAERARYNAPPFAGLYI GQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGADCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDA DLGKLAGGNVLRVMREAEAVARRLQAERPPSSATLAELDGKR
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=393, Percent_Identity=40.9669211195929, Blast_Score=289, Evalue=3e-78, Organism=Homo sapiens, GI4758190, Length=393, Percent_Identity=40.9669211195929, Blast_Score=289, Evalue=3e-78, Organism=Homo sapiens, GI11641269, Length=387, Percent_Identity=38.2428940568475, Blast_Score=263, Evalue=2e-70, Organism=Homo sapiens, GI193211608, Length=399, Percent_Identity=35.5889724310777, Blast_Score=252, Evalue=4e-67, Organism=Homo sapiens, GI193211610, Length=399, Percent_Identity=35.5889724310777, Blast_Score=248, Evalue=8e-66, Organism=Drosophila melanogaster, GI221475880, Length=384, Percent_Identity=41.40625, Blast_Score=299, Evalue=3e-81, Organism=Drosophila melanogaster, GI281362638, Length=396, Percent_Identity=40.4040404040404, Blast_Score=280, Evalue=2e-75, Organism=Drosophila melanogaster, GI281362636, Length=396, Percent_Identity=40.4040404040404, Blast_Score=280, Evalue=2e-75, Organism=Drosophila melanogaster, GI161083233, Length=375, Percent_Identity=38.4, Blast_Score=246, Evalue=2e-65, Organism=Drosophila melanogaster, GI21356391, Length=345, Percent_Identity=28.695652173913, Blast_Score=139, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 47689; Mature: 47689
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAV CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH RERFESKLDRADLSKDTAALPKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAV HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCHHHH QTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVASLVGIEGGHQINDSLPALRQ HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHEEECCCCCCCCHHHHHHHH MYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM HHHCCCCEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWS HHHHHHHCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCCCCEEEEEEHHHHCCCCCEECC ADRAAERARYNAPPFAGLYIGQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGA HHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCC DCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDADLGKLAGGNVLRVMREAEAV CCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHH ARRLQAERPPSSATLAELDGKR HHHHHCCCCCCCCHHHHCCCCC >Mature Secondary Structure MRMTKLFCSAAALALLAVAAPAQAQSPQTPQIDPKIAARVDRVLARTPLIDGHNDLPWAV CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHH RERFESKLDRADLSKDTAALPKPADEPPLMTDIPRLKAGRVGGQFWSVWIPATLDGPEAV HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEEEEEEEEECCCCHHHH QTTLEQIDIVKQMAARWPADLEMAYTAADIVRIHKAGKVASLVGIEGGHQINDSLPALRQ HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHEEECCCCCCCCHHHHHHHH MYDAGARYMTLTHSRATRWADSATDNPRHDGLSPFGEEVVREMNRMGMLVDLSHVSEAGM HHHCCCCEEEEECHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHH KDALRVSAAPVIFSHSGARAVADHPRNVSDEVLALLKANRGVVMVNFATLYASDEMVKWS HHHHHHHCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCCCCEEEEEEHHHHCCCCCEECC ADRAAERARYNAPPFAGLYIGQPERAAAALAAWEAAHPRPVVTVGMIADHVEHIVRVCGA HHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHCC DCVGIGSDFDGIPDTPAGLEGVDRFPVLLAELARRGWSDADLGKLAGGNVLRVMREAEAV CCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHH ARRLQAERPPSSATLAELDGKR HHHHHCCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]