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The map label for this gene is 197103694

Identifier: 197103694

GI number: 197103694

Start: 229767

End: 230378

Strand: Direct

Name: 197103694

Synonym: PHZ_c0228

Alternate gene names: NA

Gene position: 229767-230378 (Clockwise)

Preceding gene: 197103691

Following gene: 197103695

Centisome position: 5.75

GC content: 67.97

Gene sequence:

>612_bases
ATGTCCAGGCGCGTCCTCGCGCTCGTCGCGGTCTTGGCTCTGGCGCTCGCCATCCTCACCGGTCTCGCCGTCCGTAAAGG
TGTCCTGGGTCCGGAGGAGCAAACCGCCGCCGTGGGCGGGGCGTTCCAACTGGTGGACCAGACGGGCGCCACGGTCGACG
AGGACGTGCTGAAGGGCAAGTGGAGCGCGGTCTTCTTCGGCTTCACCCACTGCCCCGACGTGTGCCCGACGACGCTGTTC
GAGATGGCCGAGGTCGAGCGCCTGATGGGCGAGAAGGCCGGGACCCTGCAGACCGTGTTCATCTCGGTGGACCCCGAACG
CGACACCGTCCAGCAGGTGGCGGCCTATGTGAAGAACGACGCCTTCCCCAGGCGCCTGATCGGCCTGACCGGCACGCCGG
AGCAGGTGGACCGGGCGGCAAAGGCCTATCACGTCTACTACCAGAAGGCCGGCGAGGGCCCGGACTACCAGGTCAACCAC
GCCTCCTACACCTATCTGATGAGCCCCAAGGGCCGGTTCGTCTGCGTTCTGCCCTACGACCTCGGCCCCGAGCAGGTCGC
GGCGAAGATCGAGACCGCCATGCGGGCGGGTCCGAACGCGACGAGCTGCTGA

Upstream 100 bases:

>100_bases
GATGGGGGGCCGGGATCGCCGCCGTCTGCGCGCGCGCGTTCGCCATGGTCCTCCTCAGGCCCGCCCGCCGCGGCCGGGCC
GCAAGACAAGGGAAGCTCGC

Downstream 100 bases:

>100_bases
GGCCTTCGCCGGCGTCGGCGGCGCGCCCTTCCCACCATTCGCTCTTCAGCCCGCCGACGGGAGCTTCGGCGAATGGTCCC
CCCTTCCCGCTTCGCGGGAC

Product: uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MSRRVLALVAVLALALAILTGLAVRKGVLGPEEQTAAVGGAFQLVDQTGATVDEDVLKGKWSAVFFGFTHCPDVCPTTLF
EMAEVERLMGEKAGTLQTVFISVDPERDTVQQVAAYVKNDAFPRRLIGLTGTPEQVDRAAKAYHVYYQKAGEGPDYQVNH
ASYTYLMSPKGRFVCVLPYDLGPEQVAAKIETAMRAGPNATSC

Sequences:

>Translated_203_residues
MSRRVLALVAVLALALAILTGLAVRKGVLGPEEQTAAVGGAFQLVDQTGATVDEDVLKGKWSAVFFGFTHCPDVCPTTLF
EMAEVERLMGEKAGTLQTVFISVDPERDTVQQVAAYVKNDAFPRRLIGLTGTPEQVDRAAKAYHVYYQKAGEGPDYQVNH
ASYTYLMSPKGRFVCVLPYDLGPEQVAAKIETAMRAGPNATSC
>Mature_202_residues
SRRVLALVAVLALALAILTGLAVRKGVLGPEEQTAAVGGAFQLVDQTGATVDEDVLKGKWSAVFFGFTHCPDVCPTTLFE
MAEVERLMGEKAGTLQTVFISVDPERDTVQQVAAYVKNDAFPRRLIGLTGTPEQVDRAAKAYHVYYQKAGEGPDYQVNHA
SYTYLMSPKGRFVCVLPYDLGPEQVAAKIETAMRAGPNATSC

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI4759068, Length=163, Percent_Identity=43.558282208589, Blast_Score=122, Evalue=2e-28,
Organism=Homo sapiens, GI281182727, Length=168, Percent_Identity=39.8809523809524, Blast_Score=121, Evalue=4e-28,
Organism=Homo sapiens, GI281182722, Length=168, Percent_Identity=39.8809523809524, Blast_Score=121, Evalue=4e-28,
Organism=Homo sapiens, GI281182716, Length=168, Percent_Identity=39.8809523809524, Blast_Score=121, Evalue=4e-28,
Organism=Homo sapiens, GI153791313, Length=168, Percent_Identity=39.8809523809524, Blast_Score=121, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17531419, Length=205, Percent_Identity=35.1219512195122, Blast_Score=113, Evalue=5e-26,
Organism=Saccharomyces cerevisiae, GI6319498, Length=205, Percent_Identity=33.1707317073171, Blast_Score=114, Evalue=8e-27,
Organism=Saccharomyces cerevisiae, GI6319511, Length=145, Percent_Identity=39.3103448275862, Blast_Score=107, Evalue=9e-25,
Organism=Drosophila melanogaster, GI19920710, Length=161, Percent_Identity=42.8571428571429, Blast_Score=127, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 21901; Mature: 21770

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRVLALVAVLALALAILTGLAVRKGVLGPEEQTAAVGGAFQLVDQTGATVDEDVLKGK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCC
WSAVFFGFTHCPDVCPTTLFEMAEVERLMGEKAGTLQTVFISVDPERDTVQQVAAYVKND
HHEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCC
AFPRRLIGLTGTPEQVDRAAKAYHVYYQKAGEGPDYQVNHASYTYLMSPKGRFVCVLPYD
CCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEECCCCCEEEEEECC
LGPEQVAAKIETAMRAGPNATSC
CCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SRRVLALVAVLALALAILTGLAVRKGVLGPEEQTAAVGGAFQLVDQTGATVDEDVLKGK
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCC
WSAVFFGFTHCPDVCPTTLFEMAEVERLMGEKAGTLQTVFISVDPERDTVQQVAAYVKND
HHEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHCC
AFPRRLIGLTGTPEQVDRAAKAYHVYYQKAGEGPDYQVNHASYTYLMSPKGRFVCVLPYD
CCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEECCCCCEEEEEECC
LGPEQVAAKIETAMRAGPNATSC
CCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA