Click here to switch to the map view.

The map label for this gene is sdhC [H]

Identifier: 197103676

GI number: 197103676

Start: 208296

End: 208685

Strand: Direct

Name: sdhC [H]

Synonym: PHZ_c0210

Alternate gene names: 197103676

Gene position: 208296-208685 (Clockwise)

Preceding gene: 197103674

Following gene: 197103677

Centisome position: 5.21

GC content: 71.79

Gene sequence:

>390_bases
GTGGTTCGCGAGCGGCCGACGTCGCCGCATACGACGATCTGGCGGTGGCACCTGACCATGGCCACCTCGATCCTGCACCG
GATCACCGGGGTGGCGCTCTACGGCGGCGCGCTGATCGCGGCGGCCTGGGCGCTGTCGCTGGCCGGCGGGCCCGAGACCT
ACGCCGCCTTCAAGGGCGTGATGGGCTCGTTCCTCGGCAAGCTCGCGCTGTTCGGCCTGACGCTGGCGGGCTTCTACCAC
CTGGGGAACGGCGTCCGGCACCTGACCTGGGACCTGGGGCACGGCTTCGACCTGAAGAGCGCCAACGCCTCGGCGGTGGG
CGTCATCGCCTTCGCCGTCGCCGCCACCCTGGCGGTGTGGGTGATCGCCGGCATGACGGGAGCCCTCTGA

Upstream 100 bases:

>100_bases
CTTTCGTTGACACCCGACGAGGCAGGCCTACAACCGGACCGGCTTCGGACGCTGGGTTTCGGAGAGTGGGACGGACGGCA
CGATGGCTGAGGTAACGAGG

Downstream 100 bases:

>100_bases
TGTCCAGCTTCCGCACCCCTCTTTCGCGGGCCAAGGGCCTGGGCTCGGCCAAGCACGGCGTCGGCCACTGGATCGGCGAG
CGCGTCAGCGCCGCGGCCCT

Product: succinate dehydrogenase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MVRERPTSPHTTIWRWHLTMATSILHRITGVALYGGALIAAAWALSLAGGPETYAAFKGVMGSFLGKLALFGLTLAGFYH
LGNGVRHLTWDLGHGFDLKSANASAVGVIAFAVAATLAVWVIAGMTGAL

Sequences:

>Translated_129_residues
MVRERPTSPHTTIWRWHLTMATSILHRITGVALYGGALIAAAWALSLAGGPETYAAFKGVMGSFLGKLALFGLTLAGFYH
LGNGVRHLTWDLGHGFDLKSANASAVGVIAFAVAATLAVWVIAGMTGAL
>Mature_129_residues
MVRERPTSPHTTIWRWHLTMATSILHRITGVALYGGALIAAAWALSLAGGPETYAAFKGVMGSFLGKLALFGLTLAGFYH
LGNGVRHLTWDLGHGFDLKSANASAVGVIAFAVAATLAVWVIAGMTGAL

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Homo sapiens, GI4506863, Length=103, Percent_Identity=42.7184466019417, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI78711822, Length=99, Percent_Identity=40.4040404040404, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13506; Mature: 13506

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRERPTSPHTTIWRWHLTMATSILHRITGVALYGGALIAAAWALSLAGGPETYAAFKGV
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
MGSFLGKLALFGLTLAGFYHLGNGVRHLTWDLGHGFDLKSANASAVGVIAFAVAATLAVW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VIAGMTGAL
HHHHHHCCC
>Mature Secondary Structure
MVRERPTSPHTTIWRWHLTMATSILHRITGVALYGGALIAAAWALSLAGGPETYAAFKGV
CCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
MGSFLGKLALFGLTLAGFYHLGNGVRHLTWDLGHGFDLKSANASAVGVIAFAVAATLAVW
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
VIAGMTGAL
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]