Click here to switch to the map view.

The map label for this gene is ccmC [H]

Identifier: 197103602

GI number: 197103602

Start: 127417

End: 128145

Strand: Reverse

Name: ccmC [H]

Synonym: PHZ_c0136

Alternate gene names: 197103602

Gene position: 128145-127417 (Counterclockwise)

Preceding gene: 197103603

Following gene: 197103601

Centisome position: 3.21

GC content: 73.25

Gene sequence:

>729_bases
ATGATCCCGGCCCCCGCCTTCCTGGCCAATCCCGAGCGCTTCATGGCGTTCTCGCGCTGGGCCGCGCCGCTGTTCGGCTT
GCTCGCCGCCGCGCTGGCGGCCGCCGGCCTGTGGCTGGGCTTCGCCGCCCCGCCCGACTACCAGCAGGGCCTGACCGTCC
GGATCATGTTCATCCACGTGCCGGCGGCGCAGATCTCGATGTTCGCCTACGTCTGCCTGGCGGTGGCGAGCTTCCTGTCG
CTGGTGTTCCGGCACGTCCTGGCCGACGCGGCCGCCCAGGCCGCGGCGCCGCTCGGCGCGGGCTTCACCTTCCTGGCCCT
GGTCACCGGCGCGCTCTGGGGCCGGCCGATGTGGGGCGCCTGGTGGGTCTGGGACGCCCGGCTGACCTCGGTGCTGGTGC
TGTTCCTGCTGTACCTCGCCTACATGGCCCTGCGCGCGGCGATCGACGACGAGGCCAAGGCCGGGCGCGCAGCCGCCATC
CTGGCGCTGGTGGGCGCGGTGAACCTGCCGGTCATCAAGTACAGCGTGGAGTGGTGGAACACCCTGCACCAGGGCTCGAC
CCTCTTCGCCGAGGGCGGTCCCGCCCTGCCCGCCGTCTACCTGACGCCGCTGCTGCTGATGAGCCTTTCCTATCTGTCGG
CCTTCGGCTCGCTGTGGCTGGTGCGGATCCGCGGCGAGGTGTGGCGCCGGCGGGCCGAGGCCGCGGCGCTGCGGCAGGCG
CGGGGCTGA

Upstream 100 bases:

>100_bases
CGCCGGGACCCCCGCCGCCGCCGATGTAGGGAGAGGCGCGTAGGGGCCTGCGCCCGGGACCGCTTGCGGGTCGGGCCGCC
GGGCCTTAAGCGGATCGGCC

Downstream 100 bases:

>100_bases
GCCGATGCCGCAGACGCTGCCTGAGACCCTGCCCGACTACGCCGCCTACATCTGGCCCGCCTTCGTCGTGACTGGCCTGG
CCTTCGCCGGCATGGTGTGG

Product: heme ABC transporter permease

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycZ [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MIPAPAFLANPERFMAFSRWAAPLFGLLAAALAAAGLWLGFAAPPDYQQGLTVRIMFIHVPAAQISMFAYVCLAVASFLS
LVFRHVLADAAAQAAAPLGAGFTFLALVTGALWGRPMWGAWWVWDARLTSVLVLFLLYLAYMALRAAIDDEAKAGRAAAI
LALVGAVNLPVIKYSVEWWNTLHQGSTLFAEGGPALPAVYLTPLLLMSLSYLSAFGSLWLVRIRGEVWRRRAEAAALRQA
RG

Sequences:

>Translated_242_residues
MIPAPAFLANPERFMAFSRWAAPLFGLLAAALAAAGLWLGFAAPPDYQQGLTVRIMFIHVPAAQISMFAYVCLAVASFLS
LVFRHVLADAAAQAAAPLGAGFTFLALVTGALWGRPMWGAWWVWDARLTSVLVLFLLYLAYMALRAAIDDEAKAGRAAAI
LALVGAVNLPVIKYSVEWWNTLHQGSTLFAEGGPALPAVYLTPLLLMSLSYLSAFGSLWLVRIRGEVWRRRAEAAALRQA
RG
>Mature_242_residues
MIPAPAFLANPERFMAFSRWAAPLFGLLAAALAAAGLWLGFAAPPDYQQGLTVRIMFIHVPAAQISMFAYVCLAVASFLS
LVFRHVLADAAAQAAAPLGAGFTFLALVTGALWGRPMWGAWWVWDARLTSVLVLFLLYLAYMALRAAIDDEAKAGRAAAI
LALVGAVNLPVIKYSVEWWNTLHQGSTLFAEGGPALPAVYLTPLLLMSLSYLSAFGSLWLVRIRGEVWRRRAEAAALRQA
RG

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=240, Percent_Identity=47.9166666666667, Blast_Score=195, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 26176; Mature: 26176

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPAPAFLANPERFMAFSRWAAPLFGLLAAALAAAGLWLGFAAPPDYQQGLTVRIMFIHV
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
PAAQISMFAYVCLAVASFLSLVFRHVLADAAAQAAAPLGAGFTFLALVTGALWGRPMWGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCH
WWVWDARLTSVLVLFLLYLAYMALRAAIDDEAKAGRAAAILALVGAVNLPVIKYSVEWWN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH
TLHQGSTLFAEGGPALPAVYLTPLLLMSLSYLSAFGSLWLVRIRGEVWRRRAEAAALRQA
HHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RG
CC
>Mature Secondary Structure
MIPAPAFLANPERFMAFSRWAAPLFGLLAAALAAAGLWLGFAAPPDYQQGLTVRIMFIHV
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEC
PAAQISMFAYVCLAVASFLSLVFRHVLADAAAQAAAPLGAGFTFLALVTGALWGRPMWGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCH
WWVWDARLTSVLVLFLLYLAYMALRAAIDDEAKAGRAAAILALVGAVNLPVIKYSVEWWN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHH
TLHQGSTLFAEGGPALPAVYLTPLLLMSLSYLSAFGSLWLVRIRGEVWRRRAEAAALRQA
HHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1850420; 12597275 [H]