| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is qheDH [H]
Identifier: 197103523
GI number: 197103523
Start: 48745
End: 50673
Strand: Reverse
Name: qheDH [H]
Synonym: PHZ_c0057
Alternate gene names: 197103523
Gene position: 50673-48745 (Counterclockwise)
Preceding gene: 197103526
Following gene: 197103518
Centisome position: 1.27
GC content: 71.85
Gene sequence:
>1929_bases ATGGGCGTCTGGAAGCGGATGGCGCAGGGCGGCGGCGTGGCGGCGTTGGCCGCGGCGGCCCTTGGCGCGGGTCTCGGGTT CGGCCAGCTGGCGAACGCCCAGGCGCCGGACGATGCGCCGACGCCCGGCAAGCTCGTCTACGACCAGTACTGCGCGTCCT GCCACGACAAGCCCGAGCCGGGCAGCCGGGCGGCGCCGATCGGCAACCTGCGAAAGATGAGCGCCCAGACGCTGACCACG GTGCTGACCACCGGGGTGATGAAGCCGATGGGCGACCAGCTCAGCCGCCGCCAGATGCGCGAGCTGGTCGAGTACCTGGC CGCGCCGGCGGGCCCGCTGGGGACCGAATGGATCGAGACGGCGATGTGCGCGCGCGGGCAGCGCGAGGTGGACGTGTCGG GCAAGCCCGCCCAGCTCGGCTTCGGCGTCGACCTCGACAACTCCCGCCGGATGAGCGCCGCCCAGGCCGGCCTGAAGACG AAGGACGTCGCCGACCTGGAGGTCGCCTGGACCTTCGCCTTCCCGCGCACCAGCAGCCTGCGCAGCCAGGGCGTGGTCGT GGGCTCGACGCTGTTCTATCCGGCCGGCCAGACGAACTACCTGGTGGCGCTGGACACCAAGTCCGGCTGCGTGAAATGGG CCAGCGAGCTGCCCTCGCCGATCCGCAACAGCCTGGCCGTCGGCCGGCTGGGCCCCAAGGGCCCGCTGGCGGTGGTCGGC GGCGACAACGCCGGCAATCTCGTGGCCGTCGACGCCAAGACCGGCAAGGTCGCCTGGCGCGTCGATCCGCGGCACGACAA GAACGTCCCGCTGAGCGGCTCGCCGCTGTTCCACGAGGACAAGATCATCGTCCCGGTCTCGGCCATGGACGTGGCCAACG CCATGCGGCCCAACTTCGAGTGCTGCAAGAGCCACGGCGCGGTCGTGGCGGTCGAGGCCGCCAGCGGACGGACCCTGTGG ACCTGGCACACCATGGAGGACGCCAAGCCGCTGGGGCGGAAAACCTCCACCGGCGTGGAGACCTACGGTCCGTCGGGCGC CCCGATCTGGTCGAGCCCGGCGATCGATCCGCGCAAGGGGATCGTCTACACCGCCACGGGCGAGAACACCTCGCCGCCGG CCACCAAGACGAGCGACGCTGTGGTGGCCATCGACCTTTCCACAGGCAAGGACCGGTGGGTGTTCCAGGCCCTGGAGAAC GACGTCTGGAACATGTCGTGCCCCATCGGGCCGCCGCCGCCCGGCCAGCCGCTGAAGCCCAACTGCTACTTCGCCAATGA GGGCAGCGTGCTGCGCGACCACGACTTCGGCGGCGGTCCGGTGATCTTTCGCGGGAAAGGCGGGCGCGAGCTGATCCTGG CGGGCCAGAAGTCGGGCGACGTCTGGGCGCTGGAGCCGCGCGGCGGCAAGGTCGTCTGGCGCCACACCTTCGGCCCCGGC ACCCCGCTGGGCGGCGTCCACTGGGGCCTGGCCACCGACGGCGTGCGCGTCTTCGCCCCGATCAGCGACCCGAACGTGCC GGCCGACAAGTCCGCCGCCGGGATGCACGCCATCGACGTGGCGAGCGGCAAGATCGCCTGGCAGTGGAAGGCCGCCCCCG ACTGCGAAGGCGATCGGAAGACGCGGGTCCCGATCTGCGCCAGCCGCTACGGCCTGTCGGCGCCGCCGCTGGTCATCGAC GGCGCGGTGCTGGCGGGATCGCTGGACGGCCGGCTCTGGGTGTTCGACGCCGTTCGGGGCGACGTGCTCGCCAGCTACGA CACGGCCCGGACGCATCAGTCGGTGAACGGGCTCGCGGGCTCGGGCGGCTCGATCGACGCGGCCGGCCTGTTCGCCGGCG ACGGCATGGTGTTCGTCAACTCGGGCTATGCGGCCTTCGGCCAGCAGCCGGGCAACGTGCTGGTGGCGTACCGGCCGAAG GCGAAATAG
Upstream 100 bases:
>100_bases CGCGCGGGGATTTCAGCCGGGCAATCTGAATATAACGGCGGGCGGCTAGCTTCCGCCCGAGAGCGAGCCGTCGAACGGCC GGTATGTTTTGGGGGAAACG
Downstream 100 bases:
>100_bases CAGCGGCGGGGCGGGGGCGTCAGGCCCCCGCTACCTCTAGGCGCCCGTCACCTCGTCCCAGAAGCGCTTGGCCTTGCCGA TGAAGCTGGCCGACTTCGGA
Product: glucose dehydrogenase
Products: NA
Alternate protein names: QH-EDH1; Quinohaemoprotein ethanol dehydrogenase type I [H]
Number of amino acids: Translated: 642; Mature: 641
Protein sequence:
>642_residues MGVWKRMAQGGGVAALAAAALGAGLGFGQLANAQAPDDAPTPGKLVYDQYCASCHDKPEPGSRAAPIGNLRKMSAQTLTT VLTTGVMKPMGDQLSRRQMRELVEYLAAPAGPLGTEWIETAMCARGQREVDVSGKPAQLGFGVDLDNSRRMSAAQAGLKT KDVADLEVAWTFAFPRTSSLRSQGVVVGSTLFYPAGQTNYLVALDTKSGCVKWASELPSPIRNSLAVGRLGPKGPLAVVG GDNAGNLVAVDAKTGKVAWRVDPRHDKNVPLSGSPLFHEDKIIVPVSAMDVANAMRPNFECCKSHGAVVAVEAASGRTLW TWHTMEDAKPLGRKTSTGVETYGPSGAPIWSSPAIDPRKGIVYTATGENTSPPATKTSDAVVAIDLSTGKDRWVFQALEN DVWNMSCPIGPPPPGQPLKPNCYFANEGSVLRDHDFGGGPVIFRGKGGRELILAGQKSGDVWALEPRGGKVVWRHTFGPG TPLGGVHWGLATDGVRVFAPISDPNVPADKSAAGMHAIDVASGKIAWQWKAAPDCEGDRKTRVPICASRYGLSAPPLVID GAVLAGSLDGRLWVFDAVRGDVLASYDTARTHQSVNGLAGSGGSIDAAGLFAGDGMVFVNSGYAAFGQQPGNVLVAYRPK AK
Sequences:
>Translated_642_residues MGVWKRMAQGGGVAALAAAALGAGLGFGQLANAQAPDDAPTPGKLVYDQYCASCHDKPEPGSRAAPIGNLRKMSAQTLTT VLTTGVMKPMGDQLSRRQMRELVEYLAAPAGPLGTEWIETAMCARGQREVDVSGKPAQLGFGVDLDNSRRMSAAQAGLKT KDVADLEVAWTFAFPRTSSLRSQGVVVGSTLFYPAGQTNYLVALDTKSGCVKWASELPSPIRNSLAVGRLGPKGPLAVVG GDNAGNLVAVDAKTGKVAWRVDPRHDKNVPLSGSPLFHEDKIIVPVSAMDVANAMRPNFECCKSHGAVVAVEAASGRTLW TWHTMEDAKPLGRKTSTGVETYGPSGAPIWSSPAIDPRKGIVYTATGENTSPPATKTSDAVVAIDLSTGKDRWVFQALEN DVWNMSCPIGPPPPGQPLKPNCYFANEGSVLRDHDFGGGPVIFRGKGGRELILAGQKSGDVWALEPRGGKVVWRHTFGPG TPLGGVHWGLATDGVRVFAPISDPNVPADKSAAGMHAIDVASGKIAWQWKAAPDCEGDRKTRVPICASRYGLSAPPLVID GAVLAGSLDGRLWVFDAVRGDVLASYDTARTHQSVNGLAGSGGSIDAAGLFAGDGMVFVNSGYAAFGQQPGNVLVAYRPK AK >Mature_641_residues GVWKRMAQGGGVAALAAAALGAGLGFGQLANAQAPDDAPTPGKLVYDQYCASCHDKPEPGSRAAPIGNLRKMSAQTLTTV LTTGVMKPMGDQLSRRQMRELVEYLAAPAGPLGTEWIETAMCARGQREVDVSGKPAQLGFGVDLDNSRRMSAAQAGLKTK DVADLEVAWTFAFPRTSSLRSQGVVVGSTLFYPAGQTNYLVALDTKSGCVKWASELPSPIRNSLAVGRLGPKGPLAVVGG DNAGNLVAVDAKTGKVAWRVDPRHDKNVPLSGSPLFHEDKIIVPVSAMDVANAMRPNFECCKSHGAVVAVEAASGRTLWT WHTMEDAKPLGRKTSTGVETYGPSGAPIWSSPAIDPRKGIVYTATGENTSPPATKTSDAVVAIDLSTGKDRWVFQALEND VWNMSCPIGPPPPGQPLKPNCYFANEGSVLRDHDFGGGPVIFRGKGGRELILAGQKSGDVWALEPRGGKVVWRHTFGPGT PLGGVHWGLATDGVRVFAPISDPNVPADKSAAGMHAIDVASGKIAWQWKAAPDCEGDRKTRVPICASRYGLSAPPLVIDG AVLAGSLDGRLWVFDAVRGDVLASYDTARTHQSVNGLAGSGGSIDAAGLFAGDGMVFVNSGYAAFGQQPGNVLVAYRPKA K
Specific function: Catalyzes the dye-linked oxidation of primary alcohols to the corresponding aldehydes and the (subsequent) oxidation of the aldehydes to carboxylic acids [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR017512 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.98.1 [H]
Molecular weight: Translated: 67236; Mature: 67105
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVWKRMAQGGGVAALAAAALGAGLGFGQLANAQAPDDAPTPGKLVYDQYCASCHDKPEP CCHHHHHHCCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC GSRAAPIGNLRKMSAQTLTTVLTTGVMKPMGDQLSRRQMRELVEYLAAPAGPLGTEWIET CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AMCARGQREVDVSGKPAQLGFGVDLDNSRRMSAAQAGLKTKDVADLEVAWTFAFPRTSSL HHHHCCCCEECCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCH RSQGVVVGSTLFYPAGQTNYLVALDTKSGCVKWASELPSPIRNSLAVGRLGPKGPLAVVG HHCCEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHCCHHHHHCEEECCCCCCCCEEEEE GDNAGNLVAVDAKTGKVAWRVDPRHDKNVPLSGSPLFHEDKIIVPVSAMDVANAMRPNFE CCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEECCEEEEEECHHHHHHHHCCCHH CCKSHGAVVAVEAASGRTLWTWHTMEDAKPLGRKTSTGVETYGPSGAPIWSSPAIDPRKG HHHCCCCEEEEEECCCCEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC IVYTATGENTSPPATKTSDAVVAIDLSTGKDRWVFQALENDVWNMSCPIGPPPPGQPLKP EEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCC NCYFANEGSVLRDHDFGGGPVIFRGKGGRELILAGQKSGDVWALEPRGGKVVWRHTFGPG CEEECCCCCEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCC TPLGGVHWGLATDGVRVFAPISDPNVPADKSAAGMHAIDVASGKIAWQWKAAPDCEGDRK CCCCCEEECEECCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCC TRVPICASRYGLSAPPLVIDGAVLAGSLDGRLWVFDAVRGDVLASYDTARTHQSVNGLAG CCCCEEHHCCCCCCCCEEEECEEEEECCCCCEEEEECCCCCEEECCCHHHHHHHHCCCCC SGGSIDAAGLFAGDGMVFVNSGYAAFGQQPGNVLVAYRPKAK CCCCEEECEEEECCCEEEEECCCCCCCCCCCCEEEEECCCCC >Mature Secondary Structure GVWKRMAQGGGVAALAAAALGAGLGFGQLANAQAPDDAPTPGKLVYDQYCASCHDKPEP CHHHHHHCCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCC GSRAAPIGNLRKMSAQTLTTVLTTGVMKPMGDQLSRRQMRELVEYLAAPAGPLGTEWIET CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AMCARGQREVDVSGKPAQLGFGVDLDNSRRMSAAQAGLKTKDVADLEVAWTFAFPRTSSL HHHHCCCCEECCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCH RSQGVVVGSTLFYPAGQTNYLVALDTKSGCVKWASELPSPIRNSLAVGRLGPKGPLAVVG HHCCEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHCCHHHHHCEEECCCCCCCCEEEEE GDNAGNLVAVDAKTGKVAWRVDPRHDKNVPLSGSPLFHEDKIIVPVSAMDVANAMRPNFE CCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEECCEEEEEECHHHHHHHHCCCHH CCKSHGAVVAVEAASGRTLWTWHTMEDAKPLGRKTSTGVETYGPSGAPIWSSPAIDPRKG HHHCCCCEEEEEECCCCEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC IVYTATGENTSPPATKTSDAVVAIDLSTGKDRWVFQALENDVWNMSCPIGPPPPGQPLKP EEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCC NCYFANEGSVLRDHDFGGGPVIFRGKGGRELILAGQKSGDVWALEPRGGKVVWRHTFGPG CEEECCCCCEEEECCCCCCCEEEECCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCC TPLGGVHWGLATDGVRVFAPISDPNVPADKSAAGMHAIDVASGKIAWQWKAAPDCEGDRK CCCCCEEECEECCCEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCCC TRVPICASRYGLSAPPLVIDGAVLAGSLDGRLWVFDAVRGDVLASYDTARTHQSVNGLAG CCCCEEHHCCCCCCCCEEEECEEEEECCCCCEEEEECCCCCEEECCCHHHHHHHHCCCCC SGGSIDAAGLFAGDGMVFVNSGYAAFGQQPGNVLVAYRPKAK CCCCEEECEEEECCCEEEEECCCCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8654419; 7601151; 3521592; 11679760; 11714714 [H]