| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is dnaJ [H]
Identifier: 197103522
GI number: 197103522
Start: 47545
End: 48708
Strand: Direct
Name: dnaJ [H]
Synonym: PHZ_c0056
Alternate gene names: 197103522
Gene position: 47545-48708 (Clockwise)
Preceding gene: 197103521
Following gene: 197103524
Centisome position: 1.19
GC content: 72.08
Gene sequence:
>1164_bases TTGATGCGGGACTATTACGAGATCCTGGGCGTCAATCGCGGCTGCGACGACGCCGCCCTGAAGGCGGCGTTCCGCAAGCT GGCGATGGAGCACCACCCCGACCGCAACGGCGGTTGCGAGGAGGCGGCCGGCCGCTTCAAGGAAATCAACGAGGCCTATT CGGTCCTCTCCGACCCGCAGAAGCGCGCGGCCTACGACCGCTTCGGCCATGCGGGCGTCAACGGCATGAACGGCGGCGGC CCCGGCGGCGCCCAGTTCCACGACGTCCACGACATCTTCAACGAGGTGTTCGGCGACGTCTTCGGCGACATGTTCGGCGG TCGCGCCCGCGGCTCCCACCGGGGCGGCCCCGCCCGCGGGGCGGACCTGCGCTATGACCTGGAGATCACCCTCGAGCAGG CCTACGCCGGCGCCGAGGTCGAGATCACCGTCCCCGCCACCCTGACCTGCGAGACCTGCGAAGGCTCCGGGGCCAAGCCG GGCACCAGCCCGACCACCTGCACCACCTGCCAGGGCGCCGGCCGCATCCGCGCCACCCAGGGCTTCTTCTCGATCGAGCG GGCCTGTCCCCGCTGCGGCGGCTCGGGGACCATGGTGCTCGATCCCTGCACGGACTGCCACGGCATGGGCCAGGTGCGCC GCGAGCGCACGCTGGCGGTCCGCATCCCGCCGGGCGTCGACGACGGCGCCCGCATCCGGCTGGCCGGCGAGGGGGATTCC GGGGCCCGCGGCGGCCCGCGCGGCGACCTCTACATCTTCCTGTCGGTGCGCCCGCACGAGCTGTTCGAGCGCGATGGCCT GGACCTGCTGTGCACGGTGCCGGTGCCGATGTGCGTGGCTGCGCTCGGCGGCGAGATCGAGGCCCCCTGCCTGCTGGGCG GCGAGAACTGCGACGGGAACTGCAAGATCACCGTCAAGGTCCCCGAGGGCGCCCAGACCGGCAAGACCCTCCGTGTGAAG GGCCGCGGCATGCCCTCGCTGCGCTCGCGCGAGCGGGGCGACCTGGTGGTCGAGCTGTTCGTCGAGACGCCGACCCGGCT CACCGTCCGCCAGAAGGAGCTGATGCGCGAGCTGGCCGGCCTGTGCGGCGAGCAGCAGCATCCGAAGTCGGCCAGCTTCA TCGGCAAGGCCAAGCGCTTCTGGGACGAGGTGACGGGCGCCTAG
Upstream 100 bases:
>100_bases CGGTAAGGGTTGCCCCCGCCCGCTCGGCCGACTTAAGCCTTGCAGTCGGGCGGGGGCCGACCCACCTGAATTCCAGCCCA ATTTTTGAGCGCCTGACAGT
Downstream 100 bases:
>100_bases AGGTAGCGGGGGCCTGACGCCCCCGCCCCGCCGCTGCTATTTCGCCTTCGGCCGGTACGCCACCAGCACGTTGCCCGGCT GCTGGCCGAAGGCCGCATAG
Product: chaperone protein DnaJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MMRDYYEILGVNRGCDDAALKAAFRKLAMEHHPDRNGGCEEAAGRFKEINEAYSVLSDPQKRAAYDRFGHAGVNGMNGGG PGGAQFHDVHDIFNEVFGDVFGDMFGGRARGSHRGGPARGADLRYDLEITLEQAYAGAEVEITVPATLTCETCEGSGAKP GTSPTTCTTCQGAGRIRATQGFFSIERACPRCGGSGTMVLDPCTDCHGMGQVRRERTLAVRIPPGVDDGARIRLAGEGDS GARGGPRGDLYIFLSVRPHELFERDGLDLLCTVPVPMCVAALGGEIEAPCLLGGENCDGNCKITVKVPEGAQTGKTLRVK GRGMPSLRSRERGDLVVELFVETPTRLTVRQKELMRELAGLCGEQQHPKSASFIGKAKRFWDEVTGA
Sequences:
>Translated_387_residues MMRDYYEILGVNRGCDDAALKAAFRKLAMEHHPDRNGGCEEAAGRFKEINEAYSVLSDPQKRAAYDRFGHAGVNGMNGGG PGGAQFHDVHDIFNEVFGDVFGDMFGGRARGSHRGGPARGADLRYDLEITLEQAYAGAEVEITVPATLTCETCEGSGAKP GTSPTTCTTCQGAGRIRATQGFFSIERACPRCGGSGTMVLDPCTDCHGMGQVRRERTLAVRIPPGVDDGARIRLAGEGDS GARGGPRGDLYIFLSVRPHELFERDGLDLLCTVPVPMCVAALGGEIEAPCLLGGENCDGNCKITVKVPEGAQTGKTLRVK GRGMPSLRSRERGDLVVELFVETPTRLTVRQKELMRELAGLCGEQQHPKSASFIGKAKRFWDEVTGA >Mature_387_residues MMRDYYEILGVNRGCDDAALKAAFRKLAMEHHPDRNGGCEEAAGRFKEINEAYSVLSDPQKRAAYDRFGHAGVNGMNGGG PGGAQFHDVHDIFNEVFGDVFGDMFGGRARGSHRGGPARGADLRYDLEITLEQAYAGAEVEITVPATLTCETCEGSGAKP GTSPTTCTTCQGAGRIRATQGFFSIERACPRCGGSGTMVLDPCTDCHGMGQVRRERTLAVRIPPGVDDGARIRLAGEGDS GARGGPRGDLYIFLSVRPHELFERDGLDLLCTVPVPMCVAALGGEIEAPCLLGGENCDGNCKITVKVPEGAQTGKTLRVK GRGMPSLRSRERGDLVVELFVETPTRLTVRQKELMRELAGLCGEQQHPKSASFIGKAKRFWDEVTGA
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=362, Percent_Identity=32.8729281767956, Blast_Score=199, Evalue=3e-51, Organism=Homo sapiens, GI205360840, Length=362, Percent_Identity=32.8729281767956, Blast_Score=199, Evalue=4e-51, Organism=Homo sapiens, GI5031741, Length=383, Percent_Identity=32.6370757180157, Blast_Score=155, Evalue=5e-38, Organism=Homo sapiens, GI194328760, Length=350, Percent_Identity=31.4285714285714, Blast_Score=154, Evalue=2e-37, Organism=Homo sapiens, GI194328758, Length=350, Percent_Identity=31.4285714285714, Blast_Score=153, Evalue=2e-37, Organism=Homo sapiens, GI4504511, Length=349, Percent_Identity=32.6647564469914, Blast_Score=147, Evalue=1e-35, Organism=Homo sapiens, GI7706495, Length=363, Percent_Identity=33.6088154269972, Blast_Score=147, Evalue=1e-35, Organism=Homo sapiens, GI194328762, Length=313, Percent_Identity=30.3514376996805, Blast_Score=126, Evalue=3e-29, Organism=Homo sapiens, GI6631085, Length=396, Percent_Identity=26.2626262626263, Blast_Score=113, Evalue=4e-25, Organism=Homo sapiens, GI39204547, Length=303, Percent_Identity=28.7128712871287, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI47777312, Length=113, Percent_Identity=48.6725663716814, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI27151736, Length=136, Percent_Identity=38.9705882352941, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI88501736, Length=137, Percent_Identity=38.6861313868613, Blast_Score=86, Evalue=7e-17, Organism=Homo sapiens, GI21553335, Length=104, Percent_Identity=43.2692307692308, Blast_Score=85, Evalue=1e-16, Organism=Homo sapiens, GI194306642, Length=105, Percent_Identity=46.6666666666667, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI194306640, Length=105, Percent_Identity=46.6666666666667, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI201862518, Length=120, Percent_Identity=40.8333333333333, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI201862587, Length=120, Percent_Identity=40.8333333333333, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI56549115, Length=120, Percent_Identity=40.8333333333333, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI9558755, Length=117, Percent_Identity=38.4615384615385, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI5453690, Length=190, Percent_Identity=33.1578947368421, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI23503241, Length=108, Percent_Identity=41.6666666666667, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI29126218, Length=68, Percent_Identity=45.5882352941176, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI17388799, Length=105, Percent_Identity=41.9047619047619, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI4885495, Length=105, Percent_Identity=41.9047619047619, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI45504382, Length=68, Percent_Identity=42.6470588235294, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI68077166, Length=75, Percent_Identity=50.6666666666667, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI68077168, Length=75, Percent_Identity=50.6666666666667, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI22749377, Length=107, Percent_Identity=42.9906542056075, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI72534740, Length=106, Percent_Identity=41.5094339622642, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI24308127, Length=85, Percent_Identity=36.4705882352941, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI56687498, Length=112, Percent_Identity=35.7142857142857, Blast_Score=67, Evalue=3e-11, Organism=Escherichia coli, GI1786197, Length=387, Percent_Identity=49.8708010335917, Blast_Score=382, Evalue=1e-107, Organism=Escherichia coli, GI1787235, Length=361, Percent_Identity=32.9639889196676, Blast_Score=159, Evalue=2e-40, Organism=Caenorhabditis elegans, GI17553096, Length=372, Percent_Identity=32.5268817204301, Blast_Score=169, Evalue=3e-42, Organism=Caenorhabditis elegans, GI17553098, Length=372, Percent_Identity=32.5268817204301, Blast_Score=168, Evalue=4e-42, Organism=Caenorhabditis elegans, GI212645553, Length=363, Percent_Identity=34.7107438016529, Blast_Score=137, Evalue=8e-33, Organism=Caenorhabditis elegans, GI17507263, Length=352, Percent_Identity=32.3863636363636, Blast_Score=135, Evalue=3e-32, Organism=Caenorhabditis elegans, GI17563890, Length=232, Percent_Identity=31.0344827586207, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI115532378, Length=103, Percent_Identity=40.7766990291262, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17534355, Length=73, Percent_Identity=47.945205479452, Blast_Score=81, Evalue=9e-16, Organism=Caenorhabditis elegans, GI86563276, Length=106, Percent_Identity=39.622641509434, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=50.7936507936508, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17568643, Length=76, Percent_Identity=44.7368421052632, Blast_Score=71, Evalue=9e-13, Organism=Caenorhabditis elegans, GI115532476, Length=66, Percent_Identity=50, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17554874, Length=77, Percent_Identity=42.8571428571429, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17538236, Length=113, Percent_Identity=36.283185840708, Blast_Score=69, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324265, Length=360, Percent_Identity=32.7777777777778, Blast_Score=174, Evalue=2e-44, Organism=Saccharomyces cerevisiae, GI6323870, Length=368, Percent_Identity=32.3369565217391, Blast_Score=157, Evalue=4e-39, Organism=Saccharomyces cerevisiae, GI6321094, Length=408, Percent_Identity=30.3921568627451, Blast_Score=131, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6323119, Length=371, Percent_Identity=27.2237196765499, Blast_Score=129, Evalue=1e-30, Organism=Saccharomyces cerevisiae, GI6324252, Length=294, Percent_Identity=26.530612244898, Blast_Score=106, Evalue=6e-24, Organism=Saccharomyces cerevisiae, GI6323813, Length=138, Percent_Identity=37.6811594202899, Blast_Score=77, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6324103, Length=85, Percent_Identity=43.5294117647059, Blast_Score=74, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6320888, Length=104, Percent_Identity=37.5, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6322194, Length=104, Percent_Identity=36.5384615384615, Blast_Score=70, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6324321, Length=64, Percent_Identity=45.3125, Blast_Score=68, Evalue=2e-12, Organism=Drosophila melanogaster, GI24646562, Length=348, Percent_Identity=31.8965517241379, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24646560, Length=348, Percent_Identity=31.8965517241379, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24646558, Length=348, Percent_Identity=31.8965517241379, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24646556, Length=348, Percent_Identity=31.8965517241379, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI21357547, Length=348, Percent_Identity=31.8965517241379, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI45552813, Length=378, Percent_Identity=25.3968253968254, Blast_Score=140, Evalue=2e-33, Organism=Drosophila melanogaster, GI45549272, Length=378, Percent_Identity=25.3968253968254, Blast_Score=139, Evalue=2e-33, Organism=Drosophila melanogaster, GI45552811, Length=378, Percent_Identity=25.3968253968254, Blast_Score=139, Evalue=3e-33, Organism=Drosophila melanogaster, GI20129487, Length=347, Percent_Identity=31.1239193083574, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI24584014, Length=347, Percent_Identity=31.1239193083574, Blast_Score=130, Evalue=2e-30, Organism=Drosophila melanogaster, GI19920464, Length=369, Percent_Identity=28.9972899728997, Blast_Score=125, Evalue=4e-29, Organism=Drosophila melanogaster, GI28574949, Length=382, Percent_Identity=25.9162303664921, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI85726398, Length=106, Percent_Identity=43.3962264150943, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24654066, Length=107, Percent_Identity=42.9906542056075, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24654070, Length=107, Percent_Identity=42.9906542056075, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24654068, Length=107, Percent_Identity=42.9906542056075, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24654072, Length=107, Percent_Identity=42.9906542056075, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24658562, Length=117, Percent_Identity=44.4444444444444, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI24658555, Length=117, Percent_Identity=44.4444444444444, Blast_Score=82, Evalue=6e-16, Organism=Drosophila melanogaster, GI161077138, Length=66, Percent_Identity=53.030303030303, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI21355073, Length=95, Percent_Identity=42.1052631578947, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI28574723, Length=68, Percent_Identity=45.5882352941176, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24668523, Length=68, Percent_Identity=45.5882352941176, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI17737735, Length=68, Percent_Identity=45.5882352941176, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24762799, Length=78, Percent_Identity=44.8717948717949, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI17648033, Length=69, Percent_Identity=44.9275362318841, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24584630, Length=69, Percent_Identity=44.9275362318841, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI21357687, Length=63, Percent_Identity=47.6190476190476, Blast_Score=68, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 41469; Mature: 41469
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2 ; PS00637 DNAJ_CXXCXGXG
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 4.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRDYYEILGVNRGCDDAALKAAFRKLAMEHHPDRNGGCEEAAGRFKEINEAYSVLSDPQ CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH KRAAYDRFGHAGVNGMNGGGPGGAQFHDVHDIFNEVFGDVFGDMFGGRARGSHRGGPARG HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC ADLRYDLEITLEQAYAGAEVEITVPATLTCETCEGSGAKPGTSPTTCTTCQGAGRIRATQ CCEEEEEEEEEEHHCCCCEEEEEECCEEEEECCCCCCCCCCCCCCEEEECCCCCCEEECC GFFSIERACPRCGGSGTMVLDPCTDCHGMGQVRRERTLAVRIPPGVDDGARIRLAGEGDS CHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHCCEEEEECCCCCCCCCEEEEEECCCC GARGGPRGDLYIFLSVRPHELFERDGLDLLCTVPVPMCVAALGGEIEAPCLLGGENCDGN CCCCCCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCEEECCCCCCCC CKITVKVPEGAQTGKTLRVKGRGMPSLRSRERGDLVVELFVETPTRLTVRQKELMRELAG EEEEEECCCCCCCCCEEEEECCCCCCHHCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHH LCGEQQHPKSASFIGKAKRFWDEVTGA HCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MMRDYYEILGVNRGCDDAALKAAFRKLAMEHHPDRNGGCEEAAGRFKEINEAYSVLSDPQ CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHH KRAAYDRFGHAGVNGMNGGGPGGAQFHDVHDIFNEVFGDVFGDMFGGRARGSHRGGPARG HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC ADLRYDLEITLEQAYAGAEVEITVPATLTCETCEGSGAKPGTSPTTCTTCQGAGRIRATQ CCEEEEEEEEEEHHCCCCEEEEEECCEEEEECCCCCCCCCCCCCCEEEECCCCCCEEECC GFFSIERACPRCGGSGTMVLDPCTDCHGMGQVRRERTLAVRIPPGVDDGARIRLAGEGDS CHHHHHHHCCCCCCCCCEEECCCCCCCCCHHHHHCCEEEEECCCCCCCCCEEEEEECCCC GARGGPRGDLYIFLSVRPHELFERDGLDLLCTVPVPMCVAALGGEIEAPCLLGGENCDGN CCCCCCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCEEECCCCCCCC CKITVKVPEGAQTGKTLRVKGRGMPSLRSRERGDLVVELFVETPTRLTVRQKELMRELAG EEEEEECCCCCCCCCEEEEECCCCCCHHCCCCCCEEEEEEECCCCCEEHHHHHHHHHHHH LCGEQQHPKSASFIGKAKRFWDEVTGA HCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11259647; 2345134 [H]