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The map label for this gene is ychE [C]

Identifier: 197103518

GI number: 197103518

Start: 43221

End: 43907

Strand: Reverse

Name: ychE [C]

Synonym: PHZ_c0052

Alternate gene names: 197103518

Gene position: 43907-43221 (Counterclockwise)

Preceding gene: 197103523

Following gene: 197103516

Centisome position: 1.1

GC content: 69.58

Gene sequence:

>687_bases
ATGAGCCAGGCCGACTTCGCGGTCAACTTCTTCGTCGCCCTCTTCGCCCTGCTGGACCCGCTGGGCAACGTGCCCGTGTT
CGCGGCCGCGACGGCGGGCGCGAAGCCGCGCGAGCGGGCGCTGATCGCGCTCTACGTCTCGCTGTTCGTCGTGGGCTTCC
TGACGTTCTTCTACTTCTCGGGCCTCAGCCTGCTGCAGTTCTTCGGCATCTCGCTGCCGGCCTTCCGCATCGCCGGCGGG
GTGATCCTGTTCCTGCTGGGATTGGAGATGGCCCGGGACGATTTCACCGCCACCTTCGCCGAGGCGGCCGAGGCGGCGGC
GGGCGACCCGCGCTCGGTGGCGCGCCGCCGGTTCGAACGGATGATCGTGCCCTTCGCCATGCCGCTGCTGATCGGGCCGG
GCGCCATCTCGTCAGTGGTGATCTACGCGAGCCAGGCCCAGCAGTTCGGCCTGACCGGGGCGGCCCTGGGCGTTGGCGTC
ATTGCGGCGGTCTCGGCCGCCACCCTGCTGTGCTTCCTGCTGACCCCGATCATCTCGAAGATCCTGGGACGGATCGGCCT
GACCATCGTGGTGCGCGTGCTGGGGCTGATCCTCTGCGCCCTGGCCATCCAGTTCATCTTCGCGGGGCTGGCCGAGTCCA
CCGCCGGGTTCATCCGCCCCGAGGCGGCGAACCCCTACGGGCACTGA

Upstream 100 bases:

>100_bases
GCGGCGGGGGCGGTTTGCGCAGCGGCGGCGGCGGCGGCCATGGCATGGCTCCGGAGAGGCGGGTGGTCCGCGGGGTTGGA
TTCAGGCTAAGAGCCAGCAG

Downstream 100 bases:

>100_bases
ACGCCGGTCAGAGCTTGCGGAAGCGCTGTCCCTGGCTGGCCATCAGCGCCAGACCCCACTCGTCGGGCAGCAGCTTGGCG
ACGGCGGCGATGGCCTTGTT

Product: multiple antibiotic transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSQADFAVNFFVALFALLDPLGNVPVFAAATAGAKPRERALIALYVSLFVVGFLTFFYFSGLSLLQFFGISLPAFRIAGG
VILFLLGLEMARDDFTATFAEAAEAAAGDPRSVARRRFERMIVPFAMPLLIGPGAISSVVIYASQAQQFGLTGAALGVGV
IAAVSAATLLCFLLTPIISKILGRIGLTIVVRVLGLILCALAIQFIFAGLAESTAGFIRPEAANPYGH

Sequences:

>Translated_228_residues
MSQADFAVNFFVALFALLDPLGNVPVFAAATAGAKPRERALIALYVSLFVVGFLTFFYFSGLSLLQFFGISLPAFRIAGG
VILFLLGLEMARDDFTATFAEAAEAAAGDPRSVARRRFERMIVPFAMPLLIGPGAISSVVIYASQAQQFGLTGAALGVGV
IAAVSAATLLCFLLTPIISKILGRIGLTIVVRVLGLILCALAIQFIFAGLAESTAGFIRPEAANPYGH
>Mature_227_residues
SQADFAVNFFVALFALLDPLGNVPVFAAATAGAKPRERALIALYVSLFVVGFLTFFYFSGLSLLQFFGISLPAFRIAGGV
ILFLLGLEMARDDFTATFAEAAEAAAGDPRSVARRRFERMIVPFAMPLLIGPGAISSVVIYASQAQQFGLTGAALGVGVI
AAVSAATLLCFLLTPIISKILGRIGLTIVVRVLGLILCALAIQFIFAGLAESTAGFIRPEAANPYGH

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=212, Percent_Identity=31.6037735849057, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1789842, Length=207, Percent_Identity=28.5024154589372, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787809, Length=204, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 23968; Mature: 23837

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQADFAVNFFVALFALLDPLGNVPVFAAATAGAKPRERALIALYVSLFVVGFLTFFYFS
CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLSLLQFFGISLPAFRIAGGVILFLLGLEMARDDFTATFAEAAEAAAGDPRSVARRRFER
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
MIVPFAMPLLIGPGAISSVVIYASQAQQFGLTGAALGVGVIAAVSAATLLCFLLTPIISK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILGRIGLTIVVRVLGLILCALAIQFIFAGLAESTAGFIRPEAANPYGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SQADFAVNFFVALFALLDPLGNVPVFAAATAGAKPRERALIALYVSLFVVGFLTFFYFS
CCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
GLSLLQFFGISLPAFRIAGGVILFLLGLEMARDDFTATFAEAAEAAAGDPRSVARRRFER
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
MIVPFAMPLLIGPGAISSVVIYASQAQQFGLTGAALGVGVIAAVSAATLLCFLLTPIISK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILGRIGLTIVVRVLGLILCALAIQFIFAGLAESTAGFIRPEAANPYGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12089438 [H]