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The map label for this gene is secB

Identifier: 197103472

GI number: 197103472

Start: 3724

End: 4215

Strand: Reverse

Name: secB

Synonym: PHZ_c0006

Alternate gene names: 197103472

Gene position: 4215-3724 (Counterclockwise)

Preceding gene: 197103481

Following gene: NA

Centisome position: 0.11

GC content: 72.15

Gene sequence:

>492_bases
ATGTCCGAAACCGACGCCGGCGCCCCGGGCGCGCCCGAAGCCGCCGAAGGCCAGGCGCCCGGCATCCGCATCCTCGCCCA
GTTCATCCGCGACCTGTCGTTCGAGAACCCGCGCGCGCCCGACGCCCTGCGCGCCGCCCAGACCCAGCCGCAGATCGACC
TCGGCGTCGAGATGAACGCCCGGGGCCGCGAGGACGGCCTGTTCGAGGTGGACCTGAAGCTGTCGGCCAGAGCCACCCGC
GACGACGGCGCCCTGTTCGTGGTCGAGCTGCTCTACGGCGGCGTGTTCCAGATCGCCGGCGTGCCGGCGGAGGACCTGGA
GCCGGTGCTGCTGATCGAGTGCCCGCGCTACCTCTTCCCCTTCGCCCGCCGGATCATCGCCGACGTCACGGCCGAGGGCG
GCTTCCCGCCCTTCATGCTGGATCCGATCGACTTCGCCGGCGTCTACGCGGCCCGCAAGGCCCAGGAACAGGAACAGGTC
GGCCACGCCTGA

Upstream 100 bases:

>100_bases
TGAGGCGCCATGTTAGCCGGGCCGCCCGAAGAGACGCGTTTCTCCCGCGTTTGCGATAGGATTGTTTCTCCCGCGTTTGC
GATAGGATTCAAGCCAGATC

Downstream 100 bases:

>100_bases
CGCCTGCCCTCCCCCTCGCGGGGAGGGACGCTACAGCCCGAACTTGCCCCAGAGCTCCTCGCTCTTGACCACCTCGCGGA
TGAACGCGGCGTGGACCGCG

Product: protein-export protein SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MSETDAGAPGAPEAAEGQAPGIRILAQFIRDLSFENPRAPDALRAAQTQPQIDLGVEMNARGREDGLFEVDLKLSARATR
DDGALFVVELLYGGVFQIAGVPAEDLEPVLLIECPRYLFPFARRIIADVTAEGGFPPFMLDPIDFAGVYAARKAQEQEQV
GHA

Sequences:

>Translated_163_residues
MSETDAGAPGAPEAAEGQAPGIRILAQFIRDLSFENPRAPDALRAAQTQPQIDLGVEMNARGREDGLFEVDLKLSARATR
DDGALFVVELLYGGVFQIAGVPAEDLEPVLLIECPRYLFPFARRIIADVTAEGGFPPFMLDPIDFAGVYAARKAQEQEQV
GHA
>Mature_162_residues
SETDAGAPGAPEAAEGQAPGIRILAQFIRDLSFENPRAPDALRAAQTQPQIDLGVEMNARGREDGLFEVDLKLSARATRD
DGALFVVELLYGGVFQIAGVPAEDLEPVLLIECPRYLFPFARRIIADVTAEGGFPPFMLDPIDFAGVYAARKAQEQEQVG
HA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family

Homologues:

Organism=Escherichia coli, GI1790038, Length=129, Percent_Identity=30.2325581395349, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECB_PHEZH (B4RBG0)

Other databases:

- EMBL:   CP000747
- RefSeq:   YP_002128849.1
- GeneID:   6789492
- GenomeReviews:   CP000747_GR
- KEGG:   pzu:PHZ_c0006
- HOGENOM:   HBG294212
- OMA:   NIDVQAN
- ProtClustDB:   CLSK891684
- GO:   GO:0005737
- HAMAP:   MF_00821
- InterPro:   IPR003708
- Gene3D:   G3DSA:3.10.420.10
- PRINTS:   PR01594
- TIGRFAMs:   TIGR00809

Pfam domain/function: PF02556 SecB; SSF54611 SecB

EC number: NA

Molecular weight: Translated: 17582; Mature: 17451

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETDAGAPGAPEAAEGQAPGIRILAQFIRDLSFENPRAPDALRAAQTQPQIDLGVEMNA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEECEEECC
RGREDGLFEVDLKLSARATRDDGALFVVELLYGGVFQIAGVPAEDLEPVLLIECPRYLFP
CCCCCCEEEEEEEEECCCCCCCCCEEHHHHHHCCHHEECCCCHHHCCCEEEEECCHHHHH
FARRIIADVTAEGGFPPFMLDPIDFAGVYAARKAQEQEQVGHA
HHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SETDAGAPGAPEAAEGQAPGIRILAQFIRDLSFENPRAPDALRAAQTQPQIDLGVEMNA
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEECEEECC
RGREDGLFEVDLKLSARATRDDGALFVVELLYGGVFQIAGVPAEDLEPVLLIECPRYLFP
CCCCCCEEEEEEEEECCCCCCCCCEEHHHHHHCCHHEECCCCHHHCCCEEEEECCHHHHH
FARRIIADVTAEGGFPPFMLDPIDFAGVYAARKAQEQEQVGHA
HHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA