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The map label for this gene is yijO [C]

Identifier: 195978926

GI number: 195978926

Start: 1899760

End: 1901022

Strand: Direct

Name: yijO [C]

Synonym: Sez_1830

Alternate gene names: 195978926

Gene position: 1899760-1901022 (Clockwise)

Preceding gene: 195978919

Following gene: 195978928

Centisome position: 93.85

GC content: 35.55

Gene sequence:

>1263_bases
TTGGCTAAACGGCTTAGTCATTTAGCTAACAAGTCAGAAAGGTCATATACCAAAATGGTTTCGTTTCATTTAAAACACAT
TCAAGCTTTGCATAACCTATCACAATTACCTGTTTTAGTGCTTTCTCAAAATCTTGAGCTCCTTCAAGCTTATGATGACG
AGGAGCGTCGATTCCCCTACTATGAATTAATTAAAACATTAGATATTCCTAGTAATACTGAGCTCACTTGTTATGAAGGA
ACACTTGAGGAATCCTCTCTAATGTTTCCTATTGGTGACAAGTTTATTTTCATTGGGCCTTTTTACACCTCTTTCTTTCA
GGATAGCTATAAGGAGGAATTAGCCGATAGCTTCTTGAAGCGCTATCCTGATAAGTCAAAAAAAGAGCTTGTTGGCTATA
TCTCTACTATTCCTCATTTCCCTGCTTCTCATATTCGAAGCCTTTTGATAGCTGTTGATGCCTTTTTTGACACCAGCTTT
GAAATGAGCTGCCAGCAAAGCATTAATGATTTACTGGAGGAAGCCCAGCTAATCTGGGAGGACCCTCATATTATAGCTAA
TCTCGAATTGGAAAACACTCCTTCGTTTCATGTCCCAACGGTATTAAATTATTTAAATCATATTATTGACTTGGTTAAGC
TAGGTAATACCGAACTCTTAAAAAAAGAAATCAATTGTATCCCTGCATCAGATGTTATCTCTTCTTCTATTTCTGCACTA
AGAGCCGAAAAAAATCTTTCGATGGTTTATTTTACAAAGCTCCTTGAGTTAAGCTTTACTGAAAATACTGATGTTGCTAA
AAACTATGAGCGTATTAAGCACTTTATGAATCTAACAGAAAAAGCACCAGATATCCTTAAGGTGCTTCAAATAAGAGCAG
CTGCTATTATTAGTCTTTCAGAATCCTTGACCAACAAAAGTGTTTCTGATAAGCAGCAAATTTATAATAGTATTTTATAT
TACGTTGATAAGCACCTGTATTCAAAATTAAAGGTATCAGATATTGCTAAGCATCTTTATATTTCAGAATCCCATTTACG
AGCTGTTTTTAAAATGTATTCTTCTATTTCGTTGCAAACCTATATTTTGAAGGAAAAAGTACAAGAAGCCAAGCTACTTT
TACGAAGAGGAGTGCCGGCTGGAGAAGTGGCTAAGCTCCTTTATTTCTACGATACCACCCATTTTTTGAAAACCTTCAAA
AAGTACACTGATACGACACCACATGATTACCTTGCTCATTATCAGCAAAGCATTACGAAATAG

Upstream 100 bases:

>100_bases
TTATGATTAGTAATAGTATGAAAAAGATAATATTTTTAATAATTCTTGTTGATGACTTCTCCATTCATACTAATCAGCTA
CTTTGTGAGTAATCAGATGC

Downstream 100 bases:

>100_bases
CTCTTTTATCATTTCTTCCTTTAATCAACCTATCGGAGCTGTTTTTTGATGCTTGTTTGATTGTACTGACTTAGGTGATT
AGCTTACTGCGTGCTAAGGA

Product: transcriptional regulator AraC family

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Multiple Sugar Metabolism Repressor; Transcriptional Regulator; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; Arabinose Operon Regulatory Protein

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MAKRLSHLANKSERSYTKMVSFHLKHIQALHNLSQLPVLVLSQNLELLQAYDDEERRFPYYELIKTLDIPSNTELTCYEG
TLEESSLMFPIGDKFIFIGPFYTSFFQDSYKEELADSFLKRYPDKSKKELVGYISTIPHFPASHIRSLLIAVDAFFDTSF
EMSCQQSINDLLEEAQLIWEDPHIIANLELENTPSFHVPTVLNYLNHIIDLVKLGNTELLKKEINCIPASDVISSSISAL
RAEKNLSMVYFTKLLELSFTENTDVAKNYERIKHFMNLTEKAPDILKVLQIRAAAIISLSESLTNKSVSDKQQIYNSILY
YVDKHLYSKLKVSDIAKHLYISESHLRAVFKMYSSISLQTYILKEKVQEAKLLLRRGVPAGEVAKLLYFYDTTHFLKTFK
KYTDTTPHDYLAHYQQSITK

Sequences:

>Translated_420_residues
MAKRLSHLANKSERSYTKMVSFHLKHIQALHNLSQLPVLVLSQNLELLQAYDDEERRFPYYELIKTLDIPSNTELTCYEG
TLEESSLMFPIGDKFIFIGPFYTSFFQDSYKEELADSFLKRYPDKSKKELVGYISTIPHFPASHIRSLLIAVDAFFDTSF
EMSCQQSINDLLEEAQLIWEDPHIIANLELENTPSFHVPTVLNYLNHIIDLVKLGNTELLKKEINCIPASDVISSSISAL
RAEKNLSMVYFTKLLELSFTENTDVAKNYERIKHFMNLTEKAPDILKVLQIRAAAIISLSESLTNKSVSDKQQIYNSILY
YVDKHLYSKLKVSDIAKHLYISESHLRAVFKMYSSISLQTYILKEKVQEAKLLLRRGVPAGEVAKLLYFYDTTHFLKTFK
KYTDTTPHDYLAHYQQSITK
>Mature_419_residues
AKRLSHLANKSERSYTKMVSFHLKHIQALHNLSQLPVLVLSQNLELLQAYDDEERRFPYYELIKTLDIPSNTELTCYEGT
LEESSLMFPIGDKFIFIGPFYTSFFQDSYKEELADSFLKRYPDKSKKELVGYISTIPHFPASHIRSLLIAVDAFFDTSFE
MSCQQSINDLLEEAQLIWEDPHIIANLELENTPSFHVPTVLNYLNHIIDLVKLGNTELLKKEINCIPASDVISSSISALR
AEKNLSMVYFTKLLELSFTENTDVAKNYERIKHFMNLTEKAPDILKVLQIRAAAIISLSESLTNKSVSDKQQIYNSILYY
VDKHLYSKLKVSDIAKHLYISESHLRAVFKMYSSISLQTYILKEKVQEAKLLLRRGVPAGEVAKLLYFYDTTHFLKTFKK
YTDTTPHDYLAHYQQSITK

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48546; Mature: 48415

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKRLSHLANKSERSYTKMVSFHLKHIQALHNLSQLPVLVLSQNLELLQAYDDEERRFPY
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHCCCHHHCCCH
YELIKTLDIPSNTELTCYEGTLEESSLMFPIGDKFIFIGPFYTSFFQDSYKEELADSFLK
HHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHH
RYPDKSKKELVGYISTIPHFPASHIRSLLIAVDAFFDTSFEMSCQQSINDLLEEAQLIWE
HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
DPHIIANLELENTPSFHVPTVLNYLNHIIDLVKLGNTELLKKEINCIPASDVISSSISAL
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
RAEKNLSMVYFTKLLELSFTENTDVAKNYERIKHFMNLTEKAPDILKVLQIRAAAIISLS
HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ESLTNKSVSDKQQIYNSILYYVDKHLYSKLKVSDIAKHLYISESHLRAVFKMYSSISLQT
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YILKEKVQEAKLLLRRGVPAGEVAKLLYFYDTTHFLKTFKKYTDTTPHDYLAHYQQSITK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AKRLSHLANKSERSYTKMVSFHLKHIQALHNLSQLPVLVLSQNLELLQAYDDEERRFPY
CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHCCCHHHCCCH
YELIKTLDIPSNTELTCYEGTLEESSLMFPIGDKFIFIGPFYTSFFQDSYKEELADSFLK
HHHHHHHCCCCCCCEEEEECCCCCCCEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHH
RYPDKSKKELVGYISTIPHFPASHIRSLLIAVDAFFDTSFEMSCQQSINDLLEEAQLIWE
HCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
DPHIIANLELENTPSFHVPTVLNYLNHIIDLVKLGNTELLKKEINCIPASDVISSSISAL
CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
RAEKNLSMVYFTKLLELSFTENTDVAKNYERIKHFMNLTEKAPDILKVLQIRAAAIISLS
HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ESLTNKSVSDKQQIYNSILYYVDKHLYSKLKVSDIAKHLYISESHLRAVFKMYSSISLQT
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YILKEKVQEAKLLLRRGVPAGEVAKLLYFYDTTHFLKTFKKYTDTTPHDYLAHYQQSITK
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA