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The map label for this gene is rarA [H]

Identifier: 195978892

GI number: 195978892

Start: 1858661

End: 1859932

Strand: Direct

Name: rarA [H]

Synonym: Sez_1796

Alternate gene names: 195978892

Gene position: 1858661-1859932 (Clockwise)

Preceding gene: 195978891

Following gene: 195978893

Centisome position: 91.82

GC content: 46.23

Gene sequence:

>1272_bases
ATGCCTGATAATCTAGCCATCAGAATGCGCCCTAGAACCATTACAGAGGTCATCGGCCAACAGCATCTGGTCGGGGAGGG
GAAAATCATTGACCGCATGGTCAAGGCTAATAGACTATCCTCAATGATTCTTTACGGACCTCCTGGTATTGGAAAGACAT
CAATTGCTAGTGCTATTGCTGGAACAACCAAGTACGCCTTTAGAACCTTCAATGCTACCATAGACAATAAAAAACGCCTC
CAAGAAATCGCTGAGGAAGCTAAGTTTTCAGGTGGACTTGTGCTTTTGCTTGATGAAATTCACCGATTGGATAAGAGTAA
GCAGGACTTTTTACTACCACTTTTAGAGCATGGGCACATTATTATGATTGGTGCTACCACAGAGAATCCTTTTTTCTCGG
TTACTCCAGCCATCAGAAGTCGAGTCCAGATTTTTGAGCTGGAGCCCCTATCACCTGAGGAGATCAAGCAAGCTCTTAAG
CTTGCCATCACTGATAAGGAGAGAGGCTTTGCCTTTGACGTAACCCTAGATGAGGCTGCTTTTGATTTTATTGCTACAGC
GACAAATGGGGATCTCCGAGCTGCCTACCAATCCCTTGACCTAGCTGTCATGTCTACCCAGCCAGATAATGAGGGGATCC
GTCATATCAGCTTAGATATTGTTGAAAATTCTTTGCAGCGCAGCTACATCACAATGGACAAAGACGGCGATGGGCATTAT
GATATACTATCTGCCTTGCAAAAATCAATCCGAGGTTCTGATGTTAATGCTAGCTTGCACTATGCTGCTAGGCTGGTCGA
AGCAGGTGACCTTCCAAGCCTTGCTAGACGCTTGACCATTATCGCCTATGAGGACATTGGTCTTGCCAATCCAGAGGCCC
AAATCCATACCGTCACTGCACTTGAAGCCGCCCAGAAAATAGGCTTTCCAGAGGCGCGTATCCTCATTGCCAATGTTGTG
ATTGATCTGGCACTGTCACCAAAGTCCAATTCCGCCTATATGGCTATGGACGCTGCTCTCGCTGATTTACGTCAACATGG
CCATCTTCCCATTCCTAGACACCTGCGTGATGGGCATTATACCGGCAGCAAGGAGCTGGGCAATGCTCAGCACTACCTTT
ACCCTCATGCGTATCCAGAAAAATGGGTCAAGCAACAATATCTCCCTGATCAGCTGGTTAAGAAAAATTACTTTGACCCC
AATGAAACAGGAAAATATGAAAGAGCCTTAGCCGCCAATAAAGCGCGAATTGATAAGCTTTCTAGCAGCTAG

Upstream 100 bases:

>100_bases
GAAAGCATCGGAACAGCTGACGGCAGGACAATGATCGCAAACTTTATGGCTGTTGTTAAAAAGCACCACAGCCAACAAAA
GCAAGGAAGGGAGGAACACA

Downstream 100 bases:

>100_bases
CCTAAAGAAAAAAACAAGAAATACGATCTTTTTTTCATTTTAGGGCTTGAAAAATTTTCAAAAAGTGGTATCATAAGAGC
ATAGAGTTATTGCTGTGGCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MPDNLAIRMRPRTITEVIGQQHLVGEGKIIDRMVKANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDNKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKSKQDFLLPLLEHGHIIMIGATTENPFFSVTPAIRSRVQIFELEPLSPEEIKQALK
LAITDKERGFAFDVTLDEAAFDFIATATNGDLRAAYQSLDLAVMSTQPDNEGIRHISLDIVENSLQRSYITMDKDGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYMAMDAALADLRQHGHLPIPRHLRDGHYTGSKELGNAQHYLYPHAYPEKWVKQQYLPDQLVKKNYFDP
NETGKYERALAANKARIDKLSSS

Sequences:

>Translated_423_residues
MPDNLAIRMRPRTITEVIGQQHLVGEGKIIDRMVKANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDNKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKSKQDFLLPLLEHGHIIMIGATTENPFFSVTPAIRSRVQIFELEPLSPEEIKQALK
LAITDKERGFAFDVTLDEAAFDFIATATNGDLRAAYQSLDLAVMSTQPDNEGIRHISLDIVENSLQRSYITMDKDGDGHY
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYMAMDAALADLRQHGHLPIPRHLRDGHYTGSKELGNAQHYLYPHAYPEKWVKQQYLPDQLVKKNYFDP
NETGKYERALAANKARIDKLSSS
>Mature_422_residues
PDNLAIRMRPRTITEVIGQQHLVGEGKIIDRMVKANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATIDNKKRLQ
EIAEEAKFSGGLVLLLDEIHRLDKSKQDFLLPLLEHGHIIMIGATTENPFFSVTPAIRSRVQIFELEPLSPEEIKQALKL
AITDKERGFAFDVTLDEAAFDFIATATNGDLRAAYQSLDLAVMSTQPDNEGIRHISLDIVENSLQRSYITMDKDGDGHYD
ILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVI
DLALSPKSNSAYMAMDAALADLRQHGHLPIPRHLRDGHYTGSKELGNAQHYLYPHAYPEKWVKQQYLPDQLVKKNYFDPN
ETGKYERALAANKARIDKLSSS

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=435, Percent_Identity=37.4712643678161, Blast_Score=249, Evalue=5e-66,
Organism=Homo sapiens, GI18426904, Length=435, Percent_Identity=34.0229885057471, Blast_Score=205, Evalue=6e-53,
Organism=Escherichia coli, GI1787119, Length=407, Percent_Identity=37.5921375921376, Blast_Score=268, Evalue=4e-73,
Organism=Saccharomyces cerevisiae, GI6324111, Length=432, Percent_Identity=35.1851851851852, Blast_Score=228, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46907; Mature: 46776

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDNLAIRMRPRTITEVIGQQHLVGEGKIIDRMVKANRLSSMILYGPPGIGKTSIASAIA
CCCCCEEEECCHHHHHHHCCHHCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
GTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIHRLDKSKQDFLLPLLEHGHI
CCHHHHEEEECCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCHHHHHHHHHCCCE
IMIGATTENPFFSVTPAIRSRVQIFELEPLSPEEIKQALKLAITDKERGFAFDVTLDEAA
EEEEECCCCCCEEECHHHHCCEEEEEECCCCHHHHHHHHHEEEEECCCCEEEEEEEHHHH
FDFIATATNGDLRAAYQSLDLAVMSTQPDNEGIRHISLDIVENSLQRSYITMDKDGDGHY
HHHEEECCCCHHHHHHHHHCEEEEECCCCCCCCEEEEHHHHHHHHHHHEEEEECCCCCHH
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTA
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCCCEEEHHH
LEAAQKIGFPEARILIANVVIDLALSPKSNSAYMAMDAALADLRQHGHLPIPRHLRDGHY
HHHHHHCCCCHHHHHHEEEHEEEEECCCCCCEEEHHHHHHHHHHHCCCCCCCHHCCCCCC
TGSKELGNAQHYLYPHAYPEKWVKQQYLPDQLVKKNYFDPNETGKYERALAANKARIDKL
CCCHHCCCCCEEECCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
SSS
CCC
>Mature Secondary Structure 
PDNLAIRMRPRTITEVIGQQHLVGEGKIIDRMVKANRLSSMILYGPPGIGKTSIASAIA
CCCCEEEECCHHHHHHHCCHHCCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
GTTKYAFRTFNATIDNKKRLQEIAEEAKFSGGLVLLLDEIHRLDKSKQDFLLPLLEHGHI
CCHHHHEEEECCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCHHHHHHHHHCCCE
IMIGATTENPFFSVTPAIRSRVQIFELEPLSPEEIKQALKLAITDKERGFAFDVTLDEAA
EEEEECCCCCCEEECHHHHCCEEEEEECCCCHHHHHHHHHEEEEECCCCEEEEEEEHHHH
FDFIATATNGDLRAAYQSLDLAVMSTQPDNEGIRHISLDIVENSLQRSYITMDKDGDGHY
HHHEEECCCCHHHHHHHHHCEEEEECCCCCCCCEEEEHHHHHHHHHHHEEEEECCCCCHH
DILSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTA
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCCCCCCEEEHHH
LEAAQKIGFPEARILIANVVIDLALSPKSNSAYMAMDAALADLRQHGHLPIPRHLRDGHY
HHHHHHCCCCHHHHHHEEEHEEEEECCCCCCEEEHHHHHHHHHHHCCCCCCCHHCCCCCC
TGSKELGNAQHYLYPHAYPEKWVKQQYLPDQLVKKNYFDPNETGKYERALAANKARIDKL
CCCHHCCCCCEEECCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
SSS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]