Click here to switch to the map view.

The map label for this gene is araC [C]

Identifier: 195978875

GI number: 195978875

Start: 1840558

End: 1841742

Strand: Direct

Name: araC [C]

Synonym: Sez_1779

Alternate gene names: 195978875

Gene position: 1840558-1841742 (Clockwise)

Preceding gene: 195978871

Following gene: 195978876

Centisome position: 90.93

GC content: 40.08

Gene sequence:

>1185_bases
ATGGATACTATTTCGTTAGTAAAATCTCTACAGGCCTGCTTGAAATTATCAATTACAGTATTTGATAAGGATCATCAAGT
AATAGAAAGCTTTTGGAATGATGATACCCTTGAATTTTATTATCGTTTTCAATCGGTGCTTAGGCAAATGGACAAGGAAC
AGGCGATCAATCTTTTCTTTCAGGGAAGCTATAACGAACTTTTTTTAATATACCGTTATCAGGACCATTATATTTTAATC
GGCCCTTGGCGCTGTAATGTTTTGGATAAGACCTTTTTTAAGGTGGCCATTGCTGATAAGGATTTGACTAAGGAAGAAGA
AGAGATTCTTTATCAGGCACTAAAGCATTTACCCGTTTATTCCTTAAATACCATTCGTGACCTCTTAATCGTGGTTCATT
ACTTCTTTTCTGGTAAGATAGAGGACTTGTTATCACCTCCTTTGCGTCACTATATTAGAGATTTTTCCGACAATATCGAG
ATGGAAAAGGCCAATATGTTTGTCAAGAAGCAGGAATCCAAGGTCTGTCTCTATAATTATGAAAAAAACCTATCTACCAT
TGTTCAAGAGGGTGATGTGCACAAGCTCAAGGAAATCATTTTCAGTCTACGAAATACCTTTATCCCTGTGGTGAGCGGCG
ATACGCTACGCTCTGAAAAAAATTATTCTATCATTGCCTTTGATCGGCTAGCACAGATTGCCATTCAATCTGGTATGGAT
ATTGCTGATGCCTACCATTCACGCGAGGAATTCATGAGAGACAGCGAGCTTGCGACCTCAATGCCAGATGTGCTCAAAAT
TCGTGATGCCTCACTGGTCTTTTACACCCAAAAGGTGAGCGAGCTGCGTGACAACCGCTGGAAGCATGTCTCTCCTACGG
TTAACGCCATTATCCAATATATCAGTGTCAACCTGCATAAGATTGTCACAACCGCTGAGCTAGCACAGCATTTTAACATG
AGCGAGTCCAAGCTGAGACAGATCTTTAAGCGTGATACAGGCTTGACCATCTATCAATACACCTCTAATATGAAAATTGA
AGAGGCTAAGACACTGCTACGCTCTGCCTATGCGATTAATCACATTTCAGACGTGCTGGGCTTCACTGATCCCTCACATT
TTTCAAAATTTTTCAAAAAACATACCGGAGAAAGTCCAAAGGCTTATCAGAATCGCAAGCATTAG

Upstream 100 bases:

>100_bases
TTTTATGTCTATTTCTTCAATATAAGTGCATATCCTTGCTTTTCTTAAATTTTAAGATAGAATAAGACACTGCGAGGATA
TGAAGGGGGTGATACCTAGT

Downstream 100 bases:

>100_bases
CAGTAAGATCCTCTTGGTCCGGGTAATAGCTAACACTAAGCTCTCTCCATAAAAAGACTTGATGATTTGGACTTACCGTC
CTTGTCACCAAGCCTTTTTT

Product: transcriptional regulator AraC family

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Two Component Transcriptional Regulator; Multiple Sugar Metabolism Repressor; Two-Component Response Regulator; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; Arabinose Operon Regulatory Protein; Two-Component System Response Regulator; Pdu/Cob Regulatory Protein; Transcriptional Regulator IclR Family; Response Regulator Receiver Protein

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MDTISLVKSLQACLKLSITVFDKDHQVIESFWNDDTLEFYYRFQSVLRQMDKEQAINLFFQGSYNELFLIYRYQDHYILI
GPWRCNVLDKTFFKVAIADKDLTKEEEEILYQALKHLPVYSLNTIRDLLIVVHYFFSGKIEDLLSPPLRHYIRDFSDNIE
MEKANMFVKKQESKVCLYNYEKNLSTIVQEGDVHKLKEIIFSLRNTFIPVVSGDTLRSEKNYSIIAFDRLAQIAIQSGMD
IADAYHSREEFMRDSELATSMPDVLKIRDASLVFYTQKVSELRDNRWKHVSPTVNAIIQYISVNLHKIVTTAELAQHFNM
SESKLRQIFKRDTGLTIYQYTSNMKIEEAKTLLRSAYAINHISDVLGFTDPSHFSKFFKKHTGESPKAYQNRKH

Sequences:

>Translated_394_residues
MDTISLVKSLQACLKLSITVFDKDHQVIESFWNDDTLEFYYRFQSVLRQMDKEQAINLFFQGSYNELFLIYRYQDHYILI
GPWRCNVLDKTFFKVAIADKDLTKEEEEILYQALKHLPVYSLNTIRDLLIVVHYFFSGKIEDLLSPPLRHYIRDFSDNIE
MEKANMFVKKQESKVCLYNYEKNLSTIVQEGDVHKLKEIIFSLRNTFIPVVSGDTLRSEKNYSIIAFDRLAQIAIQSGMD
IADAYHSREEFMRDSELATSMPDVLKIRDASLVFYTQKVSELRDNRWKHVSPTVNAIIQYISVNLHKIVTTAELAQHFNM
SESKLRQIFKRDTGLTIYQYTSNMKIEEAKTLLRSAYAINHISDVLGFTDPSHFSKFFKKHTGESPKAYQNRKH
>Mature_394_residues
MDTISLVKSLQACLKLSITVFDKDHQVIESFWNDDTLEFYYRFQSVLRQMDKEQAINLFFQGSYNELFLIYRYQDHYILI
GPWRCNVLDKTFFKVAIADKDLTKEEEEILYQALKHLPVYSLNTIRDLLIVVHYFFSGKIEDLLSPPLRHYIRDFSDNIE
MEKANMFVKKQESKVCLYNYEKNLSTIVQEGDVHKLKEIIFSLRNTFIPVVSGDTLRSEKNYSIIAFDRLAQIAIQSGMD
IADAYHSREEFMRDSELATSMPDVLKIRDASLVFYTQKVSELRDNRWKHVSPTVNAIIQYISVNLHKIVTTAELAQHFNM
SESKLRQIFKRDTGLTIYQYTSNMKIEEAKTLLRSAYAINHISDVLGFTDPSHFSKFFKKHTGESPKAYQNRKH

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46236; Mature: 46236

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTISLVKSLQACLKLSITVFDKDHQVIESFWNDDTLEFYYRFQSVLRQMDKEQAINLFF
CCHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHEEEEE
QGSYNELFLIYRYQDHYILIGPWRCNVLDKTFFKVAIADKDLTKEEEEILYQALKHLPVY
ECCCCCEEEEEEECCCEEEEECEECCHHHHHHHEEEECCCCCCCHHHHHHHHHHHHCCCC
SLNTIRDLLIVVHYFFSGKIEDLLSPPLRHYIRDFSDNIEMEKANMFVKKQESKVCLYNY
HHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHEECCCCEEEEEC
EKNLSTIVQEGDVHKLKEIIFSLRNTFIPVVSGDTLRSEKNYSIIAFDRLAQIAIQSGMD
HHHHHHHHHCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCCC
IADAYHSREEFMRDSELATSMPDVLKIRDASLVFYTQKVSELRDNRWKHVSPTVNAIIQY
HHHHHHHHHHHHHHHHHHHCCCHHHEECCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHHH
ISVNLHKIVTTAELAQHFNMSESKLRQIFKRDTGLTIYQYTSNMKIEEAKTLLRSAYAIN
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
HISDVLGFTDPSHFSKFFKKHTGESPKAYQNRKH
HHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCCCC
>Mature Secondary Structure
MDTISLVKSLQACLKLSITVFDKDHQVIESFWNDDTLEFYYRFQSVLRQMDKEQAINLFF
CCHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHEEEEE
QGSYNELFLIYRYQDHYILIGPWRCNVLDKTFFKVAIADKDLTKEEEEILYQALKHLPVY
ECCCCCEEEEEEECCCEEEEECEECCHHHHHHHEEEECCCCCCCHHHHHHHHHHHHCCCC
SLNTIRDLLIVVHYFFSGKIEDLLSPPLRHYIRDFSDNIEMEKANMFVKKQESKVCLYNY
HHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHEECCCCEEEEEC
EKNLSTIVQEGDVHKLKEIIFSLRNTFIPVVSGDTLRSEKNYSIIAFDRLAQIAIQSGMD
HHHHHHHHHCCCHHHHHHHHHHHHHCEEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCCC
IADAYHSREEFMRDSELATSMPDVLKIRDASLVFYTQKVSELRDNRWKHVSPTVNAIIQY
HHHHHHHHHHHHHHHHHHHCCCHHHEECCCCEEEHHHHHHHHHHCCCCCCCHHHHHHHHH
ISVNLHKIVTTAELAQHFNMSESKLRQIFKRDTGLTIYQYTSNMKIEEAKTLLRSAYAIN
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
HISDVLGFTDPSHFSKFFKKHTGESPKAYQNRKH
HHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA