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The map label for this gene is agaC [H]

Identifier: 195978412

GI number: 195978412

Start: 1342134

End: 1342850

Strand: Direct

Name: agaC [H]

Synonym: Sez_1307

Alternate gene names: 195978412

Gene position: 1342134-1342850 (Clockwise)

Preceding gene: 195978411

Following gene: 195978413

Centisome position: 66.31

GC content: 43.51

Gene sequence:

>717_bases
ATGTTACTTGGTATCTACACCAATCGCTGTATCATTCTGTCTTTTGGTGTCGGCATTATCTTGGGAGATTTGCCAACAGC
ACTTAGCATGGGAGCTATATCTGAATTAGCTTATATGGGATTTGGTGTCGGTGCTGGTGGTACTGTGCCACCCAACCCAA
TCGGACCTGGTATCTTTGGCACCTTGGTGGCTATTACCAGCGCTGGCAAAGTTACTCCGGAAGCTGCCTTAGCTCTTTCG
ACACCAATTGCCGTTGCTATTCAATTTCTTCAGACCTTTACCTATACTGCCTTTGCCGGAGCACCTGAAACAGCTAAAAA
ACAGCTTCAAAAAGGCAATATTAAAGGCTTTACATTTGCTGCTAATGGCACCATCTGGGCCTTTGCTGTGATTGGCTTAG
GACTAGGATTACTTGGAGCCTTGTCAATGGATACCTTACTTCATTTGGTCGATTATATCCCACCTGTCCTCCTAAATGGA
TTGACCGTTGCTGGTAAAATGTTACCTGCTATCGGTTTTGCTATGATTCTATCTGTTATGGCTAAAAAAGAGCTGATTCC
TTTTGTCTTGATTGGTTATGTCTGTGCAGCTTACCTGCAAATTCCAACCATCGGTATTGCCATCATAGGCATTATCTTCG
CCCTAAATGAATACTACAACAAACCAAAGCATGCAACAACAGCTGAACAAGGAGGTCAACAAGATGACTGGATCTAA

Upstream 100 bases:

>100_bases
TTAATATTTTAGATTATATTTAAGAAAGGAAATTGATATGGATATCAATTTGTTACAAGCACTTTTAATCGGTCTTTGGA
CAGCCTTTTGTTTCAGCGGA

Downstream 100 bases:

>100_bases
TAAGCTCACAAAGCGTGATTATCTGAAAACTGCTCTTAGAGCCTTTTTCCTGCAAAATGGCTTTAACTATAGCAATTATC
AAGGAATAGGCTATGCCAAT

Product: N-acetylgalactosamine permease IIC component AgaC

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MLLGIYTNRCIILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIFGTLVAITSAGKVTPEAALALS
TPIAVAIQFLQTFTYTAFAGAPETAKKQLQKGNIKGFTFAANGTIWAFAVIGLGLGLLGALSMDTLLHLVDYIPPVLLNG
LTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEYYNKPKHATTAEQGGQQDDWI

Sequences:

>Translated_238_residues
MLLGIYTNRCIILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIFGTLVAITSAGKVTPEAALALS
TPIAVAIQFLQTFTYTAFAGAPETAKKQLQKGNIKGFTFAANGTIWAFAVIGLGLGLLGALSMDTLLHLVDYIPPVLLNG
LTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEYYNKPKHATTAEQGGQQDDWI
>Mature_238_residues
MLLGIYTNRCIILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIFGTLVAITSAGKVTPEAALALS
TPIAVAIQFLQTFTYTAFAGAPETAKKQLQKGNIKGFTFAANGTIWAFAVIGLGLGLLGALSMDTLLHLVDYIPPVLLNG
LTVAGKMLPAIGFAMILSVMAKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEYYNKPKHATTAEQGGQQDDWI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=245, Percent_Identity=31.0204081632653, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788121, Length=234, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 24732; Mature: 24732

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLGIYTNRCIILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIFG
CEEEEECCCEEEEECCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
TLVAITSAGKVTPEAALALSTPIAVAIQFLQTFTYTAFAGAPETAKKQLQKGNIKGFTFA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEE
ANGTIWAFAVIGLGLGLLGALSMDTLLHLVDYIPPVLLNGLTVAGKMLPAIGFAMILSVM
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEYYNKPKHATTAEQGGQQDDWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MLLGIYTNRCIILSFGVGIILGDLPTALSMGAISELAYMGFGVGAGGTVPPNPIGPGIFG
CEEEEECCCEEEEECCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH
TLVAITSAGKVTPEAALALSTPIAVAIQFLQTFTYTAFAGAPETAKKQLQKGNIKGFTFA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEE
ANGTIWAFAVIGLGLGLLGALSMDTLLHLVDYIPPVLLNGLTVAGKMLPAIGFAMILSVM
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AKKELIPFVLIGYVCAAYLQIPTIGIAIIGIIFALNEYYNKPKHATTAEQGGQQDDWI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]