Click here to switch to the map view.

The map label for this gene is agaB [H]

Identifier: 195978411

GI number: 195978411

Start: 1341568

End: 1342056

Strand: Direct

Name: agaB [H]

Synonym: Sez_1306

Alternate gene names: 195978411

Gene position: 1341568-1342056 (Clockwise)

Preceding gene: 195978410

Following gene: 195978412

Centisome position: 66.28

GC content: 38.85

Gene sequence:

>489_bases
ATGAGACAACCAAATATTATCATGACCAGAGTTGATGAGCGTTTGATTCATGGTCAAGGCCAGCTATGGATCAAATTTTT
AAATTGCAACACTGTCATTGTGGCTAATGATGCCGTTGCTGAAGACAAAATCCAACAGTCTCTGATGAAAACTGTCGTTC
CATCAAGCATTGCCATGCGCTTTTTTTCCATTCAAAAGGTGATTGACGTGATTCACAAAGCAAGCCCTGCTCAGACAATC
TTTATTGTTGTTAAGGATTTAGAAGACATCAAGCGCTTGGTTGAAGGAGGGGTGCCCATTAAAGAGGTCAATCTTGGAAA
CATTCATAAAACAGACGATAAAATCGCCATTACCCAATTCATTTCGCTAGGCGACAAGGACAAGGCTATTATTCGGACAT
TGACTTATAATCATCATATCGTCTTTAACACTAAAACAACTCCAGCTGGCAATGGTGCCTCTGAGGTTAATATTTTAGAT
TATATTTAA

Upstream 100 bases:

>100_bases
TTATTATTTAGAGGCTCTGCTGCGCTTTTACAAGGACTGGACCCCTTATTGGTAGGCTGATAGCATTTAGCCTACAAAGA
CTATTGTTAAAGGAGATATT

Downstream 100 bases:

>100_bases
GAAAGGAAATTGATATGGATATCAATTTGTTACAAGCACTTTTAATCGGTCTTTGGACAGCCTTTTGTTTCAGCGGAATG
TTACTTGGTATCTACACCAA

Product: N-acetylgalactosamine-specific phosphotransferase enzyme IIB component AgaB

Products: NA

Alternate protein names: EIIB-Aga'; PTS system N-acetylgalactosamine-specific EIIB component 2 [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MRQPNIIMTRVDERLIHGQGQLWIKFLNCNTVIVANDAVAEDKIQQSLMKTVVPSSIAMRFFSIQKVIDVIHKASPAQTI
FIVVKDLEDIKRLVEGGVPIKEVNLGNIHKTDDKIAITQFISLGDKDKAIIRTLTYNHHIVFNTKTTPAGNGASEVNILD
YI

Sequences:

>Translated_162_residues
MRQPNIIMTRVDERLIHGQGQLWIKFLNCNTVIVANDAVAEDKIQQSLMKTVVPSSIAMRFFSIQKVIDVIHKASPAQTI
FIVVKDLEDIKRLVEGGVPIKEVNLGNIHKTDDKIAITQFISLGDKDKAIIRTLTYNHHIVFNTKTTPAGNGASEVNILD
YI
>Mature_162_residues
MRQPNIIMTRVDERLIHGQGQLWIKFLNCNTVIVANDAVAEDKIQQSLMKTVVPSSIAMRFFSIQKVIDVIHKASPAQTI
FIVVKDLEDIKRLVEGGVPIKEVNLGNIHKTDDKIAITQFISLGDKDKAIIRTLTYNHHIVFNTKTTPAGNGASEVNILD
YI

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This

COG id: COG3444

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIB type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI87082217, Length=132, Percent_Identity=47.7272727272727, Blast_Score=127, Evalue=4e-31,
Organism=Escherichia coli, GI1789527, Length=134, Percent_Identity=41.7910447761194, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI1788120, Length=124, Percent_Identity=33.0645161290323, Blast_Score=74, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004720
- InterPro:   IPR018455 [H]

Pfam domain/function: PF03830 PTSIIB_sorb [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 18133; Mature: 18133

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS51101 PTS_EIIB_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQPNIIMTRVDERLIHGQGQLWIKFLNCNTVIVANDAVAEDKIQQSLMKTVVPSSIAMR
CCCCCEEEEEHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHH
FFSIQKVIDVIHKASPAQTIFIVVKDLEDIKRLVEGGVPIKEVNLGNIHKTDDKIAITQF
HHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEHH
ISLGDKDKAIIRTLTYNHHIVFNTKTTPAGNGASEVNILDYI
HHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MRQPNIIMTRVDERLIHGQGQLWIKFLNCNTVIVANDAVAEDKIQQSLMKTVVPSSIAMR
CCCCCEEEEEHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCHHHHHH
FFSIQKVIDVIHKASPAQTIFIVVKDLEDIKRLVEGGVPIKEVNLGNIHKTDDKIAITQF
HHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEHH
ISLGDKDKAIIRTLTYNHHIVFNTKTTPAGNGASEVNILDYI
HHCCCCCCEEEEEEECCCEEEEECCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]