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The map label for this gene is yvoA [H]

Identifier: 195978135

GI number: 195978135

Start: 1048900

End: 1049598

Strand: Direct

Name: yvoA [H]

Synonym: Sez_1012

Alternate gene names: 195978135

Gene position: 1048900-1049598 (Clockwise)

Preceding gene: 195978131

Following gene: 195978136

Centisome position: 51.82

GC content: 40.2

Gene sequence:

>699_bases
ATGCTGCCAGCTTATATAAAAATTCATGACGCTATTAAAAAAGACATTGAAAAAGAAGTCTGGACTATTGGTAGTCGCCT
GCCAAGCGAACGAGATTTAGCAGAACATTTTGAGGTCAGTCGCATGACGTTGCGTCAGGCAATAACACTGCTTGTAGAGG
AGGGAATTCTAGAAAGGCGTGTTGGTAGTGGTACTTATGTTGCCAGCCATCGCGTACAAGAGAGAATGCGTGGGACCACT
AGCTTTACAGAGATCGTGAATTCTCAGGGACGTAAGCCATCTTCAAAGCTGATTTCCTATCAACGTCAGCTAGCAAGTGA
TACAGAAATAAATCAATTGCACTTAGAAGAATCAGATTACGTTATTCGAATGGAGCGCATTCGTTATGCAGATAAGGTTC
CCTTAGTTTACGAGGTAGCATCTATTCCTGAGAAATTTATTAAAAATGTCAAAAAAACTGATATTACAGAGCACTTTTTC
CAAACCCTAACCTCAAACGGTTATGAAATCGGCAAAAGTCAACAAACCATTTACGCGAAAATAGCCAGTGAGCGTGTCGC
CTCTTATCTAGAGGTAGCTAAGGGGCATGCTATTTTAGCATTGACTCAGGTTTCCTTTTTTACAGACGGTAGGCCCTTTG
AATATGTGCGTAGCCAATATGTAGGTGATCGCTTTGAATTTTATTTAGAAAATAATTAA

Upstream 100 bases:

>100_bases
TGAAAAAGCTGATTGATGAATGCTTTTGATAATAATTGGGCTGCAATTTAGGCTGAAAATATGATAAAATAAAACCATCA
TCACCCCCAAGGAGTAAAGC

Downstream 100 bases:

>100_bases
TCATAAGCAATGATGTTTAAATAACATTGATAGGAAGTGGCTCACCACTTCTTTTTTTCAACACTTGTCAAGTATATCAA
TATTTCAAGAACAGTTATTA

Product: transcriptional regulator GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MLPAYIKIHDAIKKDIEKEVWTIGSRLPSERDLAEHFEVSRMTLRQAITLLVEEGILERRVGSGTYVASHRVQERMRGTT
SFTEIVNSQGRKPSSKLISYQRQLASDTEINQLHLEESDYVIRMERIRYADKVPLVYEVASIPEKFIKNVKKTDITEHFF
QTLTSNGYEIGKSQQTIYAKIASERVASYLEVAKGHAILALTQVSFFTDGRPFEYVRSQYVGDRFEFYLENN

Sequences:

>Translated_232_residues
MLPAYIKIHDAIKKDIEKEVWTIGSRLPSERDLAEHFEVSRMTLRQAITLLVEEGILERRVGSGTYVASHRVQERMRGTT
SFTEIVNSQGRKPSSKLISYQRQLASDTEINQLHLEESDYVIRMERIRYADKVPLVYEVASIPEKFIKNVKKTDITEHFF
QTLTSNGYEIGKSQQTIYAKIASERVASYLEVAKGHAILALTQVSFFTDGRPFEYVRSQYVGDRFEFYLENN
>Mature_232_residues
MLPAYIKIHDAIKKDIEKEVWTIGSRLPSERDLAEHFEVSRMTLRQAITLLVEEGILERRVGSGTYVASHRVQERMRGTT
SFTEIVNSQGRKPSSKLISYQRQLASDTEINQLHLEESDYVIRMERIRYADKVPLVYEVASIPEKFIKNVKKTDITEHFF
QTLTSNGYEIGKSQQTIYAKIASERVASYLEVAKGHAILALTQVSFFTDGRPFEYVRSQYVGDRFEFYLENN

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=236, Percent_Identity=30.5084745762712, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790118, Length=212, Percent_Identity=28.3018867924528, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87082252, Length=216, Percent_Identity=25.462962962963, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788418, Length=228, Percent_Identity=26.3157894736842, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790540, Length=253, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26823; Mature: 26823

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPAYIKIHDAIKKDIEKEVWTIGSRLPSERDLAEHFEVSRMTLRQAITLLVEEGILERR
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSGTYVASHRVQERMRGTTSFTEIVNSQGRKPSSKLISYQRQLASDTEINQLHLEESDY
CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHEEECCCCC
VIRMERIRYADKVPLVYEVASIPEKFIKNVKKTDITEHFFQTLTSNGYEIGKSQQTIYAK
EEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
IASERVASYLEVAKGHAILALTQVSFFTDGRPFEYVRSQYVGDRFEFYLENN
HHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCHHHHHHHHCCCCEEEEEECC
>Mature Secondary Structure
MLPAYIKIHDAIKKDIEKEVWTIGSRLPSERDLAEHFEVSRMTLRQAITLLVEEGILERR
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGSGTYVASHRVQERMRGTTSFTEIVNSQGRKPSSKLISYQRQLASDTEINQLHLEESDY
CCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHEEECCCCC
VIRMERIRYADKVPLVYEVASIPEKFIKNVKKTDITEHFFQTLTSNGYEIGKSQQTIYAK
EEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
IASERVASYLEVAKGHAILALTQVSFFTDGRPFEYVRSQYVGDRFEFYLENN
HHHHHHHHHHHHHCCCEEEEEEHHHHHCCCCCHHHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]