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The map label for this gene is yqxC [H]

Identifier: 195977756

GI number: 195977756

Start: 643608

End: 644435

Strand: Direct

Name: yqxC [H]

Synonym: Sez_0620

Alternate gene names: 195977756

Gene position: 643608-644435 (Clockwise)

Preceding gene: 195977755

Following gene: 195977757

Centisome position: 31.8

GC content: 44.93

Gene sequence:

>828_bases
ATGGCTAAAGAAAGAGTAGATGTGCTAGCCTATAGACAGGGACTTTTTGAAACGCGAGAACAGGCCAAGCGCGGTGTGAT
GGCTGGGCTAGTCATATCAGCTATAAGTGGCTTACGCTTTGATAAGCCTGGTGAAAAGATTGATGAGGAGATCGAACTAA
GGCTCAAGGGTGAGAAGCTTAAGTATGTCAGCCGAGGGGGTCTCAAGCTGGAAAAAGCCTTGCAGGTCTTTGGGATCTCT
GTGCAGGATAAGGTGACAATTGATATTGGTGCTTCAACAGGTGGCTTTACAGATGTTATGCTACAGGCAGGAGCTAGGCT
GGTTTACGCTGTTGATGTTGGAACCAATCAATTGGTCTGGAAGCTCAGGCAGGATAGTCGTGTTCGAAGCATGGAGCAGT
ACAATTTTCGCTATGCAAAGCTAGCAGATTTTTCAGAAGGTCAGCCAGCCTTTGCCAGCATTGATGTGTCCTTTATTTCT
CTTAGCCTGATACTGCCGACATTGCACTGTATTTTGCAGGAAGGGGCAGAGGCTGTTGCTCTGATCAAGCCACAGTTTGA
AGCAGGGCGCGAGCAGATTGGCAAAAAAGGGATTGTCAAGGATAGACTGATTCATGAAAAAGTGATTAAGCAGGTAACAG
ATACTGCTCTTAATTGCGGATTTATCGTTAAGGGACTTGATTTTTCGCCTATCCAAGGTGGTCATGGTAATATTGAATTT
TTGGCTCATTTAGTCAAGGGAAAGGACTCCAAGGCTATTGATGATCAGCTCATACAGAGCCTTGTTAGCAGTGCACATAA
GGAATTTAAACAGCATGAAAAAGAGTGA

Upstream 100 bases:

>100_bases
GAGTCTTTGAGTCAAGCGCTAGCTATTTTTAGCAGGCTAGAAAGGGAAGAAGGCTTTGAGTCTCAGGCTATTATCAAAAG
GATCGAGGGGTTGCGACTAA

Downstream 100 bases:

>100_bases
ACGATTAGACTTAATAAAAAAAATGGTTTTGTCTCATGAGATCGAGACTCAGCATGAGCTATTAAAGCTCCTAGCTGATT
ATGGGCTAGAGCTAACTCAG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MAKERVDVLAYRQGLFETREQAKRGVMAGLVISAISGLRFDKPGEKIDEEIELRLKGEKLKYVSRGGLKLEKALQVFGIS
VQDKVTIDIGASTGGFTDVMLQAGARLVYAVDVGTNQLVWKLRQDSRVRSMEQYNFRYAKLADFSEGQPAFASIDVSFIS
LSLILPTLHCILQEGAEAVALIKPQFEAGREQIGKKGIVKDRLIHEKVIKQVTDTALNCGFIVKGLDFSPIQGGHGNIEF
LAHLVKGKDSKAIDDQLIQSLVSSAHKEFKQHEKE

Sequences:

>Translated_275_residues
MAKERVDVLAYRQGLFETREQAKRGVMAGLVISAISGLRFDKPGEKIDEEIELRLKGEKLKYVSRGGLKLEKALQVFGIS
VQDKVTIDIGASTGGFTDVMLQAGARLVYAVDVGTNQLVWKLRQDSRVRSMEQYNFRYAKLADFSEGQPAFASIDVSFIS
LSLILPTLHCILQEGAEAVALIKPQFEAGREQIGKKGIVKDRLIHEKVIKQVTDTALNCGFIVKGLDFSPIQGGHGNIEF
LAHLVKGKDSKAIDDQLIQSLVSSAHKEFKQHEKE
>Mature_274_residues
AKERVDVLAYRQGLFETREQAKRGVMAGLVISAISGLRFDKPGEKIDEEIELRLKGEKLKYVSRGGLKLEKALQVFGISV
QDKVTIDIGASTGGFTDVMLQAGARLVYAVDVGTNQLVWKLRQDSRVRSMEQYNFRYAKLADFSEGQPAFASIDVSFISL
SLILPTLHCILQEGAEAVALIKPQFEAGREQIGKKGIVKDRLIHEKVIKQVTDTALNCGFIVKGLDFSPIQGGHGNIEFL
AHLVKGKDSKAIDDQLIQSLVSSAHKEFKQHEKE

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30428; Mature: 30296

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKERVDVLAYRQGLFETREQAKRGVMAGLVISAISGLRFDKPGEKIDEEIELRLKGEKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHEEECCCHH
KYVSRGGLKLEKALQVFGISVQDKVTIDIGASTGGFTDVMLQAGARLVYAVDVGTNQLVW
HHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCHHHH
KLRQDSRVRSMEQYNFRYAKLADFSEGQPAFASIDVSFISLSLILPTLHCILQEGAEAVA
HHHHHHHHHHHHHHCCHHEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEE
LIKPQFEAGREQIGKKGIVKDRLIHEKVIKQVTDTALNCGFIVKGLDFSPIQGGHGNIEF
EECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHH
LAHLVKGKDSKAIDDQLIQSLVSSAHKEFKQHEKE
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKERVDVLAYRQGLFETREQAKRGVMAGLVISAISGLRFDKPGEKIDEEIELRLKGEKL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCHHHHEEECCCHH
KYVSRGGLKLEKALQVFGISVQDKVTIDIGASTGGFTDVMLQAGARLVYAVDVGTNQLVW
HHHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCHHHH
KLRQDSRVRSMEQYNFRYAKLADFSEGQPAFASIDVSFISLSLILPTLHCILQEGAEAVA
HHHHHHHHHHHHHHCCHHEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEE
LIKPQFEAGREQIGKKGIVKDRLIHEKVIKQVTDTALNCGFIVKGLDFSPIQGGHGNIEF
EECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHH
LAHLVKGKDSKAIDDQLIQSLVSSAHKEFKQHEKE
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]