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The map label for this gene is arcR [H]

Identifier: 195977705

GI number: 195977705

Start: 593102

End: 593782

Strand: Direct

Name: arcR [H]

Synonym: Sez_0567

Alternate gene names: 195977705

Gene position: 593102-593782 (Clockwise)

Preceding gene: 195977703

Following gene: 195977706

Centisome position: 29.3

GC content: 39.79

Gene sequence:

>681_bases
GTGATTCGAAGAGAAGATTATCAATACCTTAGAAAACTTGATGATTTCTGTCATTTTTCAATTGAACAATTTGACAAGAT
TGTCGGCCAAATGGAATTTAGACAAGCTAAAAAGGATCATATGTTATTTTTTGAAGGTGATAAGAGGGACAGACTCTTTT
TAGTGACCTCAGGTTATTTTAAGATTGAGCAGTCAGATCGAACAGGAACCTTTACCTATACTGATTTCATACGACATGGG
ACAATTTTTCCCTACGGGGGTCTGTTTACAGATGACTACTATCATTTTTCGGTGGTTGCGATGACAGATGTCACTTACTT
TTATTTCCCGACTGATTTGTTTGAGGACTATTCCTTGCACAATCAGCAGCAGATGAAGCATCTCTACAGTAAAATGTCGT
CCTTGCTGGAGCTTCATGAGCTCAAGGTGCGCAATCTCATCACCTCCAGTGCAAGCTCACGTGTGATTCAATCCTTGGCT
ATTTTACTGGTTGAAATGGGAAAGGATAGCGATACTCTGCCTTTTCAGCTGACGACTACTGACATTGCACAAATGAGTGG
AACAACCAGAGAAACCGTTAGCCATGTCTTTAGAGATTTGAAAAAGGAAGGCTTGATTGCAGTCAAGGGGAAATACCTCA
CCTACCTAGATAAAAACTATTTTCTGCAGTACACAACCTAA

Upstream 100 bases:

>100_bases
ATAACAAAAAGATGGCAGTGTGTAAAGTTTTAGATGAACCGCTTACAAAAATAGCCTTTTTATGTTAAAATAAAACAGGT
GCTTAGAAAAGGAGATTTGC

Downstream 100 bases:

>100_bases
GATCAAGTCAAAAGGCTTCGCTTAAAAAGTTTTTTGACTTTTTTTAATTTATAAATATAAGATTTTTCGTTAAAATGTAA
AAAACAAACAAGAAAACGTA

Product: transcriptional regulator ArcR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MIRREDYQYLRKLDDFCHFSIEQFDKIVGQMEFRQAKKDHMLFFEGDKRDRLFLVTSGYFKIEQSDRTGTFTYTDFIRHG
TIFPYGGLFTDDYYHFSVVAMTDVTYFYFPTDLFEDYSLHNQQQMKHLYSKMSSLLELHELKVRNLITSSASSRVIQSLA
ILLVEMGKDSDTLPFQLTTTDIAQMSGTTRETVSHVFRDLKKEGLIAVKGKYLTYLDKNYFLQYTT

Sequences:

>Translated_226_residues
MIRREDYQYLRKLDDFCHFSIEQFDKIVGQMEFRQAKKDHMLFFEGDKRDRLFLVTSGYFKIEQSDRTGTFTYTDFIRHG
TIFPYGGLFTDDYYHFSVVAMTDVTYFYFPTDLFEDYSLHNQQQMKHLYSKMSSLLELHELKVRNLITSSASSRVIQSLA
ILLVEMGKDSDTLPFQLTTTDIAQMSGTTRETVSHVFRDLKKEGLIAVKGKYLTYLDKNYFLQYTT
>Mature_226_residues
MIRREDYQYLRKLDDFCHFSIEQFDKIVGQMEFRQAKKDHMLFFEGDKRDRLFLVTSGYFKIEQSDRTGTFTYTDFIRHG
TIFPYGGLFTDDYYHFSVVAMTDVTYFYFPTDLFEDYSLHNQQQMKHLYSKMSSLLELHELKVRNLITSSASSRVIQSLA
ILLVEMGKDSDTLPFQLTTTDIAQMSGTTRETVSHVFRDLKKEGLIAVKGKYLTYLDKNYFLQYTT

Specific function: Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control [H]

COG id: COG0664

COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH crp-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018490
- InterPro:   IPR000595
- InterPro:   IPR001808
- InterPro:   IPR012318
- InterPro:   IPR014710
- InterPro:   IPR018335
- InterPro:   IPR022299
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00027 cNMP_binding; PF00325 Crp [H]

EC number: NA

Molecular weight: Translated: 26709; Mature: 26709

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRREDYQYLRKLDDFCHFSIEQFDKIVGQMEFRQAKKDHMLFFEGDKRDRLFLVTSGYF
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCEE
KIEQSDRTGTFTYTDFIRHGTIFPYGGLFTDDYYHFSVVAMTDVTYFYFPTDLFEDYSLH
EEECCCCCCCEEHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECEEEEEECHHHHHHHCCC
NQQQMKHLYSKMSSLLELHELKVRNLITSSASSRVIQSLAILLVEMGKDSDTLPFQLTTT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHH
DIAQMSGTTRETVSHVFRDLKKEGLIAVKGKYLTYLDKNYFLQYTT
HHHHHCCCHHHHHHHHHHHHHHCCEEEECCCEEEEECCCEEEEECC
>Mature Secondary Structure
MIRREDYQYLRKLDDFCHFSIEQFDKIVGQMEFRQAKKDHMLFFEGDKRDRLFLVTSGYF
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCEE
KIEQSDRTGTFTYTDFIRHGTIFPYGGLFTDDYYHFSVVAMTDVTYFYFPTDLFEDYSLH
EEECCCCCCCEEHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECEEEEEECHHHHHHHCCC
NQQQMKHLYSKMSSLLELHELKVRNLITSSASSRVIQSLAILLVEMGKDSDTLPFQLTTT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHH
DIAQMSGTTRETVSHVFRDLKKEGLIAVKGKYLTYLDKNYFLQYTT
HHHHHCCCHHHHHHHHHHHHHHCCEEEECCCEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1630321 [H]