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The map label for this gene is csd2

Identifier: 195977692

GI number: 195977692

Start: 578384

End: 579232

Strand: Direct

Name: csd2

Synonym: Sez_0551

Alternate gene names: NA

Gene position: 578384-579232 (Clockwise)

Preceding gene: 195977691

Following gene: 195977693

Centisome position: 28.57

GC content: 41.58

Gene sequence:

>849_bases
ATGTTAGAACACAAGATTGATTTTATGGTAACTGTAGAGGTCAAAGAGGCAAATGCTAATGGAGATCCACTTTCAGGTAA
TATGCCACGTACAAATGCTAAGGGGTATGGATTGATGAGTGATGTCTCTATCAAACGTAAAATTCGAAACCGTCTTCAAG
ATATGGGACAATCAATCTTTGTACAGGCTAACGAGCGGATTGAAGATGAGTTCCGTTCGCTTGAAAACCGGTTTTCTGCT
CAATTTGATAAGAATGATAAGGATGACGACATTGAGCGAAGAGCCAATGAGCTATGGTTAGATGTGCGTTCCTTTGGTCA
GGTCTTTACTTATCTGAAAAAGTCGATTGGTGTTCGTGGCCCTGTGTCCATCAGCATGGCTAAATCCTTGGAGCCAGTTG
TCATCTCAAGCCTTCAAATCACACGAAGTACCAATGGTATGGAGCCTAAAGGGGATAGTAGCCGTTCATCTGATACGATG
GGAACTAAGCACTTTGTTGATTATGGTATTTATGTCATTAAAGGATCAATCAATGCCCATTTTGCAGAAAAAACTGGCTT
TAGTGAGGAAGATGCTGACATTATTAAGCAAGCTCTTGTCAGTCTTTTTGAAAATGATGCGTCTTCAGCACGTCCTGAAG
GGTCAATGCGGGTGCGTGAGGTCTTTTGGTTTACCCATTCTAACAAATTAGGCAATGTCTCAAGTGCGCGTGTCTTTGAC
TTGTTGGTGTTTGATATGGAAACACCAGATAAGGATAGCTACGAGGCTTATGGTATTCATTTAGATGAGGAAAACTTAGC
AGCCTACCAAGCAAAAGGATTAACGGTTGAGGTCCTAGAAGGATTGTAG

Upstream 100 bases:

>100_bases
AACAGATTTTAATAAGCCTTTGGATTATCGTTTTATCTTTGGCTATTATGCCGAGAAAAAATATTTTTACACCCCAAAAG
ATGAAAGTGAGGACGCATAG

Downstream 100 bases:

>100_bases
AATGGTTTATGTAGAAGATGACTACCTGATGTTATCAGGTATCCAGCATTTTCAATTTTGTAAGCGTCAGTGGGCATTGA
TTCACATTGACCAGCAGTGG

Product: CRISPR-associated protein, Csd2 family

Products: NA

Alternate protein names: CRISPR-Associated Csh2 Family Protein; CRISPR-Associated Csd2 Family Protein; Csd2 Family CRISPR-Associated Protein; CRISPR-Associated Protein; CRISPR-Associated Protein Csh2 Family; Crispr-Associated Protein; Crispr-Protein; Cytoplasmic Protein; CRISPR-Associated Protein TM; Csh2 Family CRISPR-Associated Protein; CRISPR-Associated RAMP Csd3 Family Protein; CRISPR-Associated RAMP Protein Cmr1 Family; Cas2 Family CRISPR-Associated Protein; CRISPR-Associated Protein Csd3 Family

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MLEHKIDFMVTVEVKEANANGDPLSGNMPRTNAKGYGLMSDVSIKRKIRNRLQDMGQSIFVQANERIEDEFRSLENRFSA
QFDKNDKDDDIERRANELWLDVRSFGQVFTYLKKSIGVRGPVSISMAKSLEPVVISSLQITRSTNGMEPKGDSSRSSDTM
GTKHFVDYGIYVIKGSINAHFAEKTGFSEEDADIIKQALVSLFENDASSARPEGSMRVREVFWFTHSNKLGNVSSARVFD
LLVFDMETPDKDSYEAYGIHLDEENLAAYQAKGLTVEVLEGL

Sequences:

>Translated_282_residues
MLEHKIDFMVTVEVKEANANGDPLSGNMPRTNAKGYGLMSDVSIKRKIRNRLQDMGQSIFVQANERIEDEFRSLENRFSA
QFDKNDKDDDIERRANELWLDVRSFGQVFTYLKKSIGVRGPVSISMAKSLEPVVISSLQITRSTNGMEPKGDSSRSSDTM
GTKHFVDYGIYVIKGSINAHFAEKTGFSEEDADIIKQALVSLFENDASSARPEGSMRVREVFWFTHSNKLGNVSSARVFD
LLVFDMETPDKDSYEAYGIHLDEENLAAYQAKGLTVEVLEGL
>Mature_282_residues
MLEHKIDFMVTVEVKEANANGDPLSGNMPRTNAKGYGLMSDVSIKRKIRNRLQDMGQSIFVQANERIEDEFRSLENRFSA
QFDKNDKDDDIERRANELWLDVRSFGQVFTYLKKSIGVRGPVSISMAKSLEPVVISSLQITRSTNGMEPKGDSSRSSDTM
GTKHFVDYGIYVIKGSINAHFAEKTGFSEEDADIIKQALVSLFENDASSARPEGSMRVREVFWFTHSNKLGNVSSARVFD
LLVFDMETPDKDSYEAYGIHLDEENLAAYQAKGLTVEVLEGL

Specific function: Unknown

COG id: COG3649

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31688; Mature: 31688

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEHKIDFMVTVEVKEANANGDPLSGNMPRTNAKGYGLMSDVSIKRKIRNRLQDMGQSIF
CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHEE
VQANERIEDEFRSLENRFSAQFDKNDKDDDIERRANELWLDVRSFGQVFTYLKKSIGVRG
EECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PVSISMAKSLEPVVISSLQITRSTNGMEPKGDSSRSSDTMGTKHFVDYGIYVIKGSINAH
CCEEHHHHCCCCHHHHEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHEEEEEEEECCCEE
FAEKTGFSEEDADIIKQALVSLFENDASSARPEGSMRVREVFWFTHSNKLGNVSSARVFD
EHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHEEE
LLVFDMETPDKDSYEAYGIHLDEENLAAYQAKGLTVEVLEGL
EEEEECCCCCCCCCEEEEEEECCCCHHHHHHCCCEEEEECCC
>Mature Secondary Structure
MLEHKIDFMVTVEVKEANANGDPLSGNMPRTNAKGYGLMSDVSIKRKIRNRLQDMGQSIF
CCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHEE
VQANERIEDEFRSLENRFSAQFDKNDKDDDIERRANELWLDVRSFGQVFTYLKKSIGVRG
EECCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PVSISMAKSLEPVVISSLQITRSTNGMEPKGDSSRSSDTMGTKHFVDYGIYVIKGSINAH
CCEEHHHHCCCCHHHHEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHEEEEEEEECCCEE
FAEKTGFSEEDADIIKQALVSLFENDASSARPEGSMRVREVFWFTHSNKLGNVSSARVFD
EHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHEEE
LLVFDMETPDKDSYEAYGIHLDEENLAAYQAKGLTVEVLEGL
EEEEECCCCCCCCCEEEEEEECCCCHHHHHHCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA