Click here to switch to the map view.

The map label for this gene is csd1

Identifier: 195977691

GI number: 195977691

Start: 576500

End: 578383

Strand: Direct

Name: csd1

Synonym: Sez_0550

Alternate gene names: NA

Gene position: 576500-578383 (Clockwise)

Preceding gene: 195977690

Following gene: 195977692

Centisome position: 28.48

GC content: 38.85

Gene sequence:

>1884_bases
ATGGATTTTTTCGCCTCGCTTTTGCGTGCCTATGAGCATGCTGAGGATATTGGATTGGTTGATAATCAAGAGCAGTCTGG
AACAATCCTGTTACCGATTTATCATACCAATCGACGTTCAAATGGGAAGGATACGATTGTTGTTCAGTTGGATAAAACAG
GTCAGTTTATGAAGGCAGAGTATCTTGCTGATGGTGAGACAATCATATTTCCAGTGACCGCTGAGTCGGTTGCAAGGTCT
GGGAAAAATCCAGCCCCTCACCCCTTAGTAGATAAGCTGACCTACTTTGTTTCAGCGCACAATCAAGAGCAATATGAGAC
TTATCATCAGCAACTAGAGGGCTGGATCAATGCTTGTCAGGATAAGCAGGTGATGTCCTATCTGTCCTTGATTCAGCAGT
TTATCTTAAAAGAGGATTTTTTGGACCTGATTTGCCAATCTCTTTTTGGAAAGCAAATTAGTCGCAATGGCTTAAAAGTA
ACCTATGTTTTGTCAGAGGAAAAGGAAAAAACAGTTGATCTGTCTGCTTGCTTTTTAACATTTCAGATTGCTCAGTTCAT
CGGCTTTAAAACTGTATCTGTGACTAATTTTACGGCCTTACATAAGGATTATATTGCTTATCTAATGTCTAAGCAAACAG
CTAATACGATTTGTAATATTAGCGGTCAAAAAGAGGTCCTAGCAACAAAGCATCGCGGCTTACTTGGTAATGCCAAATTG
ATTTCTGTTAGTAACCATGCAGAGGCTTATAAGGGGCGCTTTAGAGAAAGAGATGATGTTTTTAGAGTTGGCAACCAAAC
ATCGGAGAAACTGCATCTCATGGCCAAATATTTTTTGGAGCATGAGCAGACGCATGTTTGGTTAGGCTCTGGGCAGCATA
TGATTAATTGGTTTAGCGATGACTTAGCGAATGATAGTCAGTTAAATATCACTCAGGCTTTATTGCTGGACCCATTTGAT
GATGAGGAAACTTTTTTGTCTACTCCAATGATTAGCGAAGAAAATAAAAGCATTAATCGTTCCTTTATCACAGGGCAACG
TCAATTTAGTGATAACGCTTCTTATTACATTGCCATTTTAAATAAAACCAATGATGGACGTATTGCCTTGAAATATTTCC
GGCAATTGCAGGCTTCTAGTCTTTTAAAAAACTTAGCTGTCTGGCAGGAAAATTATTCATGGGAGCTCCAGCGTAAGGGC
AATCAATTTGTTCAGAAATTACCTAGCTTTAAAGAGATTATTTTGGCTGCTTATGGGGTTGATCGTGATCGTTCTTTGGA
GCTGGATAATGACAATTTTCGTAGTGATCAGTACCAACGTCTGGTAACTAGTCTTATTGATGGAAAGCCCTTACCAGACA
CAATCGTAAAGAAATTAGAAGCCAATATCAAGCAACGGCAAAAATATAGGAAGCATTGGCATCAAGTTGAGCACATTAGC
CTTGCTATTTTACATAAACAAAACGGAGAGGAGTTCACACCAATGTTAGACAGAGACAATACTAATCGTTCTTACTTGTT
TGGGCGTTTGCTAGGAATTTATGAGTTAATTGAAAAATCACGTAACAACTCTAAGGGGAGGGCTAAAGATGAGCTGAAGC
GTATTACCAATGCAGAGCGGTATTGGACAGCCTATGCTAATCGTCCGGCTAGTTTGATGAGAAATTTGGAGGATAAGATT
TATCCTTATAGCGAATACCTCAAGATTAATGAGGCTGGCTTATGGTCTAAATTAGAAAAAGAACGTGAGGAAATTATAGC
TTTGCTGACTTCTAGTTTAGAGACAACAGATTTTAATAAGCCTTTGGATTATCGTTTTATCTTTGGCTATTATGCCGAGA
AAAAATATTTTTACACCCCAAAAGATGAAAGTGAGGACGCATAG

Upstream 100 bases:

>100_bases
TATCAAGTTATACTTTTAAGCCAGCAGGACCGATCAAACCGGTTGAGGAGGAGTTTGAAGGGTATCAGCTAGACACAATA
AGAGAAACAGGAGGGCAGTA

Downstream 100 bases:

>100_bases
ATGTTAGAACACAAGATTGATTTTATGGTAACTGTAGAGGTCAAAGAGGCAAATGCTAATGGAGATCCACTTTCAGGTAA
TATGCCACGTACAAATGCTA

Product: CRISPR-associated protein, Csd1 family

Products: NA

Alternate protein names: CRISPR-Associated RAMP Csd1 Family Protein; CRISPR-Associated Csd1 Family Protein; Cytoplasmic Protein; CRISPR-Associated Protein; Csd1 Family CRISPR-Associated Protein; Crispr-Associated Protein; CRISPR-Associated Ramp Csd1 Family Protein

Number of amino acids: Translated: 627; Mature: 627

Protein sequence:

>627_residues
MDFFASLLRAYEHAEDIGLVDNQEQSGTILLPIYHTNRRSNGKDTIVVQLDKTGQFMKAEYLADGETIIFPVTAESVARS
GKNPAPHPLVDKLTYFVSAHNQEQYETYHQQLEGWINACQDKQVMSYLSLIQQFILKEDFLDLICQSLFGKQISRNGLKV
TYVLSEEKEKTVDLSACFLTFQIAQFIGFKTVSVTNFTALHKDYIAYLMSKQTANTICNISGQKEVLATKHRGLLGNAKL
ISVSNHAEAYKGRFRERDDVFRVGNQTSEKLHLMAKYFLEHEQTHVWLGSGQHMINWFSDDLANDSQLNITQALLLDPFD
DEETFLSTPMISEENKSINRSFITGQRQFSDNASYYIAILNKTNDGRIALKYFRQLQASSLLKNLAVWQENYSWELQRKG
NQFVQKLPSFKEIILAAYGVDRDRSLELDNDNFRSDQYQRLVTSLIDGKPLPDTIVKKLEANIKQRQKYRKHWHQVEHIS
LAILHKQNGEEFTPMLDRDNTNRSYLFGRLLGIYELIEKSRNNSKGRAKDELKRITNAERYWTAYANRPASLMRNLEDKI
YPYSEYLKINEAGLWSKLEKEREEIIALLTSSLETTDFNKPLDYRFIFGYYAEKKYFYTPKDESEDA

Sequences:

>Translated_627_residues
MDFFASLLRAYEHAEDIGLVDNQEQSGTILLPIYHTNRRSNGKDTIVVQLDKTGQFMKAEYLADGETIIFPVTAESVARS
GKNPAPHPLVDKLTYFVSAHNQEQYETYHQQLEGWINACQDKQVMSYLSLIQQFILKEDFLDLICQSLFGKQISRNGLKV
TYVLSEEKEKTVDLSACFLTFQIAQFIGFKTVSVTNFTALHKDYIAYLMSKQTANTICNISGQKEVLATKHRGLLGNAKL
ISVSNHAEAYKGRFRERDDVFRVGNQTSEKLHLMAKYFLEHEQTHVWLGSGQHMINWFSDDLANDSQLNITQALLLDPFD
DEETFLSTPMISEENKSINRSFITGQRQFSDNASYYIAILNKTNDGRIALKYFRQLQASSLLKNLAVWQENYSWELQRKG
NQFVQKLPSFKEIILAAYGVDRDRSLELDNDNFRSDQYQRLVTSLIDGKPLPDTIVKKLEANIKQRQKYRKHWHQVEHIS
LAILHKQNGEEFTPMLDRDNTNRSYLFGRLLGIYELIEKSRNNSKGRAKDELKRITNAERYWTAYANRPASLMRNLEDKI
YPYSEYLKINEAGLWSKLEKEREEIIALLTSSLETTDFNKPLDYRFIFGYYAEKKYFYTPKDESEDA
>Mature_627_residues
MDFFASLLRAYEHAEDIGLVDNQEQSGTILLPIYHTNRRSNGKDTIVVQLDKTGQFMKAEYLADGETIIFPVTAESVARS
GKNPAPHPLVDKLTYFVSAHNQEQYETYHQQLEGWINACQDKQVMSYLSLIQQFILKEDFLDLICQSLFGKQISRNGLKV
TYVLSEEKEKTVDLSACFLTFQIAQFIGFKTVSVTNFTALHKDYIAYLMSKQTANTICNISGQKEVLATKHRGLLGNAKL
ISVSNHAEAYKGRFRERDDVFRVGNQTSEKLHLMAKYFLEHEQTHVWLGSGQHMINWFSDDLANDSQLNITQALLLDPFD
DEETFLSTPMISEENKSINRSFITGQRQFSDNASYYIAILNKTNDGRIALKYFRQLQASSLLKNLAVWQENYSWELQRKG
NQFVQKLPSFKEIILAAYGVDRDRSLELDNDNFRSDQYQRLVTSLIDGKPLPDTIVKKLEANIKQRQKYRKHWHQVEHIS
LAILHKQNGEEFTPMLDRDNTNRSYLFGRLLGIYELIEKSRNNSKGRAKDELKRITNAERYWTAYANRPASLMRNLEDKI
YPYSEYLKINEAGLWSKLEKEREEIIALLTSSLETTDFNKPLDYRFIFGYYAEKKYFYTPKDESEDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72738; Mature: 72738

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFFASLLRAYEHAEDIGLVDNQEQSGTILLPIYHTNRRSNGKDTIVVQLDKTGQFMKAE
CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHH
YLADGETIIFPVTAESVARSGKNPAPHPLVDKLTYFVSAHNQEQYETYHQQLEGWINACQ
HCCCCCEEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
DKQVMSYLSLIQQFILKEDFLDLICQSLFGKQISRNGLKVTYVLSEEKEKTVDLSACFLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
FQIAQFIGFKTVSVTNFTALHKDYIAYLMSKQTANTICNISGQKEVLATKHRGLLGNAKL
HHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEE
ISVSNHAEAYKGRFRERDDVFRVGNQTSEKLHLMAKYFLEHEQTHVWLGSGQHMINWFSD
EEECCHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
DLANDSQLNITQALLLDPFDDEETFLSTPMISEENKSINRSFITGQRQFSDNASYYIAIL
HCCCCCCCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHCCCHHCCCCCEEEEEEE
NKTNDGRIALKYFRQLQASSLLKNLAVWQENYSWELQRKGNQFVQKLPSFKEIILAAYGV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCHHHHHHHHHCC
DRDRSLELDNDNFRSDQYQRLVTSLIDGKPLPDTIVKKLEANIKQRQKYRKHWHQVEHIS
CCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LAILHKQNGEEFTPMLDRDNTNRSYLFGRLLGIYELIEKSRNNSKGRAKDELKRITNAER
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHH
YWTAYANRPASLMRNLEDKIYPYSEYLKINEAGLWSKLEKEREEIIALLTSSLETTDFNK
HHHHHCCCHHHHHHHHHHHCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PLDYRFIFGYYAEKKYFYTPKDESEDA
CCCEEEEEEEEECCEEEECCCCCCCCC
>Mature Secondary Structure
MDFFASLLRAYEHAEDIGLVDNQEQSGTILLPIYHTNRRSNGKDTIVVQLDKTGQFMKAE
CCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHH
YLADGETIIFPVTAESVARSGKNPAPHPLVDKLTYFVSAHNQEQYETYHQQLEGWINACQ
HCCCCCEEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
DKQVMSYLSLIQQFILKEDFLDLICQSLFGKQISRNGLKVTYVLSEEKEKTVDLSACFLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
FQIAQFIGFKTVSVTNFTALHKDYIAYLMSKQTANTICNISGQKEVLATKHRGLLGNAKL
HHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEE
ISVSNHAEAYKGRFRERDDVFRVGNQTSEKLHLMAKYFLEHEQTHVWLGSGQHMINWFSD
EEECCHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
DLANDSQLNITQALLLDPFDDEETFLSTPMISEENKSINRSFITGQRQFSDNASYYIAIL
HCCCCCCCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHCCCHHCCCCCEEEEEEE
NKTNDGRIALKYFRQLQASSLLKNLAVWQENYSWELQRKGNQFVQKLPSFKEIILAAYGV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCHHHHHHHHHCC
DRDRSLELDNDNFRSDQYQRLVTSLIDGKPLPDTIVKKLEANIKQRQKYRKHWHQVEHIS
CCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHE
LAILHKQNGEEFTPMLDRDNTNRSYLFGRLLGIYELIEKSRNNSKGRAKDELKRITNAER
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCHHH
YWTAYANRPASLMRNLEDKIYPYSEYLKINEAGLWSKLEKEREEIIALLTSSLETTDFNK
HHHHHCCCHHHHHHHHHHHCCCHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PLDYRFIFGYYAEKKYFYTPKDESEDA
CCCEEEEEEEEECCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA