Click here to switch to the map view.

The map label for this gene is comGB [H]

Identifier: 195977267

GI number: 195977267

Start: 129180

End: 130271

Strand: Direct

Name: comGB [H]

Synonym: Sez_0116

Alternate gene names: 195977267

Gene position: 129180-130271 (Clockwise)

Preceding gene: 195977266

Following gene: 195977268

Centisome position: 6.38

GC content: 40.66

Gene sequence:

>1092_bases
TTGATTGTGCGCAAAAGGAATTTGAACATCATCAAGCCAGCCAGTGGAATCAGAAGATTGATCAGCTTCTTGCAGAGGGA
CATCTCAATACCAAGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAAGCTTATCCAATTGCTCTATAACC
TATTGTCTAATGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGCTGCTACTGCCAGTCTATGTTACA
AGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTAGGTTACTCTGATGCTGTCATGAC
ACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCAGGATTATCTGAGTCAATTTCGCC
AAATCAAGCGAAAGACCATCGAGGCAGTCACGTATCCGATCATACTTTTAGGTTTTTTAGTGGTTATCATGCTAGGCTTG
CGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTTCATTTGCCTCATTATTTCTTAGG
CTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCGTTTTACCTATATGCCAGGTCCTGTAGCAGGTTAAGGCTATTTAGTC
AGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACTATGCTAGAGAATGGGGCAACCTC
ATCGGACAAGGCTTAGAATTAATCACCATTTTAGAAATGATGTCAAACGAAAAGTCACAGCTCATGCGAGAGCTTGCCAA
GGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTATCCCTTTTTTAAAAAGGAGCTAA
GCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCTATTCCCAAGAAAGCTGGGAGACC
TTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTGGTTGCTGTGGTTATTGTGATGAT
TTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Upstream 100 bases:

>100_bases
GTTTACGCTAGGCTGTTAGAATTAGGCATTTCTAGGGCAGAATTGGATAATAGTCTAGCAATGGTTGCTTACCAGCGATT
TATTAGTGGAGGTGCTTTAA

Downstream 100 bases:

>100_bases
ATGAAAATGAGATTATCAATCTTAAAAGATCAAGGTGTTCAGGCCTTCACTTTACTGGAAATGCTTCTGGTTTTATTAAT
CATTAGTGTTTTAATGCTGT

Product: late competence protein ComGB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MIVRKRNLNIIKPASGIRRLISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVT
SMEASLLKGNGLADMLAALGYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGL
RHYLIPQLESQNALTDLLLHLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNL
IGQGLELITILEMMSNEKSQLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWET
FFSQLNRATQWIQPIIFLVVAVVIVMIYAAILLPIYQHMGDVF

Sequences:

>Translated_363_residues
MIVRKRNLNIIKPASGIRRLISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVT
SMEASLLKGNGLADMLAALGYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGL
RHYLIPQLESQNALTDLLLHLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNL
IGQGLELITILEMMSNEKSQLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWET
FFSQLNRATQWIQPIIFLVVAVVIVMIYAAILLPIYQHMGDVF
>Mature_363_residues
MIVRKRNLNIIKPASGIRRLISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVT
SMEASLLKGNGLADMLAALGYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGL
RHYLIPQLESQNALTDLLLHLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNL
IGQGLELITILEMMSNEKSQLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWET
FFSQLNRATQWIQPIIFLVVAVVIVMIYAAILLPIYQHMGDVF

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 41657; Mature: 41657

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRKRNLNIIKPASGIRRLISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFN
CCEECCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAALGYSDAVMTQINLADKHGNIKL
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEE
TLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLLH
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGQGLELITILEMMSNEKSQLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHH
DIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLVVAVVIVMIYAAILLPIYQHMG
HHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DVF
CCC
>Mature Secondary Structure
MIVRKRNLNIIKPASGIRRLISFLQRDISIPSRQGLKKLSSKQQEKLIQLLYNLLSNGFN
CCEECCCCCEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAALGYSDAVMTQINLADKHGNIKL
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEE
TLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLLH
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
LPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGQGLELITILEMMSNEKSQLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYG
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHH
DIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLVVAVVIVMIYAAILLPIYQHMG
HHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
DVF
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]