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The map label for this gene is rplW [H]

Identifier: 195977210

GI number: 195977210

Start: 70725

End: 70973

Strand: Direct

Name: rplW [H]

Synonym: Sez_0058

Alternate gene names: 195977210

Gene position: 70725-70973 (Clockwise)

Preceding gene: 195977209

Following gene: 195977211

Centisome position: 3.49

GC content: 39.76

Gene sequence:

>249_bases
ATGTATGCCCTTGAAGAAGGTAAATACACATTTGAAGTTGACACACGTGCGCACAAACTGTTAATCAAGCAAGCTGTTGA
AGCTGCATTTGACGGAGTTAAGGTTGCAAGCGTCAATACTGTTAACGTTAAACCAAAGGCTAAGCGTGTTGGTCGTTACA
CAGGTTTTACTTCAAAAACTAAAAAAGCTATCATCACTCTTACAGCTGATTCTAAAGCAATCGAGTTGTTCGCAGCTGAA
GCTGAATAA

Upstream 100 bases:

>100_bases
AACTTCTTGTAACAAAAGAAGCAATCTCTACAATTGAGGAGGTTCTTGCATAATGAATTTGTACGACGTAATCAAAAAAC
CAGTTATTACTGAAAAATCA

Downstream 100 bases:

>100_bases
TCTAAGGAGGAAATAACGTGGGTATTAAAGTTTATAAACCAACGACAAATGGCCGTCGTAACATGACTTCTTTGGATTTC
GCTGAAATCACAACAAGCAC

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MYALEEGKYTFEVDTRAHKLLIKQAVEAAFDGVKVASVNTVNVKPKAKRVGRYTGFTSKTKKAIITLTADSKAIELFAAE
AE

Sequences:

>Translated_82_residues
MYALEEGKYTFEVDTRAHKLLIKQAVEAAFDGVKVASVNTVNVKPKAKRVGRYTGFTSKTKKAIITLTADSKAIELFAAE
AE
>Mature_82_residues
MYALEEGKYTFEVDTRAHKLLIKQAVEAAFDGVKVASVNTVNVKPKAKRVGRYTGFTSKTKKAIITLTADSKAIELFAAE
AE

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome [H]

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR001014
- InterPro:   IPR013025 [H]

Pfam domain/function: PF00276 Ribosomal_L23 [H]

EC number: NA

Molecular weight: Translated: 8979; Mature: 8979

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYALEEGKYTFEVDTRAHKLLIKQAVEAAFDGVKVASVNTVNVKPKAKRVGRYTGFTSKT
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHHHCCCCCCCCCCC
KKAIITLTADSKAIELFAAEAE
CEEEEEEECCCCEEEEEEECCC
>Mature Secondary Structure
MYALEEGKYTFEVDTRAHKLLIKQAVEAAFDGVKVASVNTVNVKPKAKRVGRYTGFTSKT
CCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCHHHCCCCCCCCCCC
KKAIITLTADSKAIELFAAEAE
CEEEEEEECCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA