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The map label for this gene is recO

Identifier: 195977176

GI number: 195977176

Start: 28908

End: 29678

Strand: Direct

Name: recO

Synonym: Sez_0020

Alternate gene names: 195977176

Gene position: 28908-29678 (Clockwise)

Preceding gene: 195977175

Following gene: 195977177

Centisome position: 1.43

GC content: 37.48

Gene sequence:

>771_bases
ATGCGTATTCAGAGGTCACTTGGTATTGTCTTGTACAATAAAAACTATCGTGAAGATGATAAGCTCGTAAAAATATTTAC
AGAAGCGGCGGGCAAGCGTATGTTTTTCGTGAAACATATTGGTCGTTCTAAACTAGCTCCTGTGGTCCAGCCTTTAACGG
CTGCTGATTTTCTATTGAAAATCAATGATTCAAGCCTTTCTTATATAGAGGATTATAATCAGGTGGAGGCTTATCGGCAC
ATCAATGAAGATTTTTTTAGGCTATCCTATGCTAGTTATGTCTTGGCTCTGGCTGATGCGGCTATTCCAGATAATGAGCC
TGATCCTCAGTTGTTTGCTTTTTTGAAAAAGACTCTTGATCTGATAGAAGAAGGGCTAGATTATGACATTTTAACGAATA
TCTTTGAAATCCAGATTTTGGATCGTTTTGGGGTGAGAATGAATTTTCATGATTGTGTTTTTTGTCACAGTACCAATCTG
CCTTTTGATTTTTCTCATAAGTATTCAGGTGTCCTTTGTCCGCAGCATTACCATGAGGATGAGGGGCGATATGGCTTGGA
TCCCAATGTGATTTATTTGATTAATCGCTTTCAAACGATTAATATTGACGAGCTAAAGACTATTTCTGTGAATGCTGATA
TGAAGAAAAAGCTTCGTCTTTTTATTGATGCCCTGTATGAGGATTATGTCGGTATTCGTTTGAAAAGTAAGGTCTTTATT
GATGATTTGGCTAAATGGGGAGATATTATGAAAAACAAGCAGGGCTTGTGA

Upstream 100 bases:

>100_bases
TTTCCTGGATTTTGGGTATAATATAGCTGTATTTAAGGTGTTTTAAAGGTCTAGTAAGAAAGGCATTATTACTAGCTGAG
AAGCTTGGTTATGGAGATAT

Downstream 100 bases:

>100_bases
GCTATTCAGGTGTGAATTTGTCCTTTTATGGGAATTGTCTGGGGAATATGCTATAATAGTTACGTTATTCTCTAGGATAT
TTTTCGTTAAGAAAAATAGG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSKLAPVVQPLTAADFLLKINDSSLSYIEDYNQVEAYRH
INEDFFRLSYASYVLALADAAIPDNEPDPQLFAFLKKTLDLIEEGLDYDILTNIFEIQILDRFGVRMNFHDCVFCHSTNL
PFDFSHKYSGVLCPQHYHEDEGRYGLDPNVIYLINRFQTINIDELKTISVNADMKKKLRLFIDALYEDYVGIRLKSKVFI
DDLAKWGDIMKNKQGL

Sequences:

>Translated_256_residues
MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSKLAPVVQPLTAADFLLKINDSSLSYIEDYNQVEAYRH
INEDFFRLSYASYVLALADAAIPDNEPDPQLFAFLKKTLDLIEEGLDYDILTNIFEIQILDRFGVRMNFHDCVFCHSTNL
PFDFSHKYSGVLCPQHYHEDEGRYGLDPNVIYLINRFQTINIDELKTISVNADMKKKLRLFIDALYEDYVGIRLKSKVFI
DDLAKWGDIMKNKQGL
>Mature_256_residues
MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSKLAPVVQPLTAADFLLKINDSSLSYIEDYNQVEAYRH
INEDFFRLSYASYVLALADAAIPDNEPDPQLFAFLKKTLDLIEEGLDYDILTNIFEIQILDRFGVRMNFHDCVFCHSTNL
PFDFSHKYSGVLCPQHYHEDEGRYGLDPNVIYLINRFQTINIDELKTISVNADMKKKLRLFIDALYEDYVGIRLKSKVFI
DDLAKWGDIMKNKQGL

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_STREM (B4U5G6)

Other databases:

- EMBL:   CP001129
- RefSeq:   YP_002122420.1
- EnsemblBacteria:   EBSTRT00000009152
- GeneID:   6760858
- GenomeReviews:   CP001129_GR
- KEGG:   sez:Sez_0020
- GeneTree:   EBGT00050000028034
- HOGENOM:   HBG634481
- OMA:   VMARGAK
- ProtClustDB:   PRK00085
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 29828; Mature: 29828

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSKLAPVVQPLTAADFLLK
CCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHHEEEEE
INDSSLSYIEDYNQVEAYRHINEDFFRLSYASYVLALADAAIPDNEPDPQLFAFLKKTLD
ECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LIEEGLDYDILTNIFEIQILDRFGVRMNFHDCVFCHSTNLPFDFSHKYSGVLCPQHYHED
HHHCCCCHHHHHHHHHEEEEHHCCCEECCCEEEEEECCCCCCCCCCCCCCEECCCCCCCC
EGRYGLDPNVIYLINRFQTINIDELKTISVNADMKKKLRLFIDALYEDYVGIRLKSKVFI
CCCCCCCCCEEEEEECCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCEEEECHHHH
DDLAKWGDIMKNKQGL
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRIQRSLGIVLYNKNYREDDKLVKIFTEAAGKRMFFVKHIGRSKLAPVVQPLTAADFLLK
CCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEHHCCCHHHHHHHHHHHHHEEEEE
INDSSLSYIEDYNQVEAYRHINEDFFRLSYASYVLALADAAIPDNEPDPQLFAFLKKTLD
ECCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LIEEGLDYDILTNIFEIQILDRFGVRMNFHDCVFCHSTNLPFDFSHKYSGVLCPQHYHED
HHHCCCCHHHHHHHHHEEEEHHCCCEECCCEEEEEECCCCCCCCCCCCCCEECCCCCCCC
EGRYGLDPNVIYLINRFQTINIDELKTISVNADMKKKLRLFIDALYEDYVGIRLKSKVFI
CCCCCCCCCEEEEEECCEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHCEEEECHHHH
DDLAKWGDIMKNKQGL
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA