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The map label for this gene is nusB [H]

Identifier: 195953014

GI number: 195953014

Start: 574205

End: 574624

Strand: Direct

Name: nusB [H]

Synonym: HY04AAS1_0639

Alternate gene names: 195953014

Gene position: 574205-574624 (Clockwise)

Preceding gene: 195953013

Following gene: 195953015

Centisome position: 36.82

GC content: 30.48

Gene sequence:

>420_bases
ATGAAAGACATAAGAGCAAGAGCACGAGAAATAGCATTTAGAAGCCTTTACGCTTGGGATATAAGTGGAGGAGAAATATC
TATTATATCTCAAGAAATTATAAACATGAGCAAACCGCCACTTAAAAAAGATAGCCAAAAATACACGCTACTAATAACGA
AAAAGTTTGGAGAGAATATAGAAAATATAGACAAGAAAATAGCCTCTTATCTTGAAAACTGGAATCTTGATGATTTAGGT
AGCATAGAAAAGGCTATTTTAAGAACTGCTTTTACAGAACTTCTTTACATAAAACCTAAAAAAAACATACAAGCCATAAT
AGATTATATAGAAATTGCAAGCAACTACGGTAATAAAAAAACGCCTTCTTTTATAAATGGTATTCTCTCCAAGCTATCAA
AAGATATCTACAATGTATAA

Upstream 100 bases:

>100_bases
ACGAAAATATTACTAAAAGCCCAAAAATTTTGATAGACATAAAAAACTTATACAACAAAGATGTTTTCTTAAAAAATGGC
TTTCTTTATTGGAGCTTATA

Downstream 100 bases:

>100_bases
GCTGCTTCTCACAAGAGAAGAAGAGAAAAACTTAGAATCTAAAAAAATATTCTCTTCTTACAATATAAATACTATCAGCT
TACCTATGATAGAAACAATA

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKDIRARAREIAFRSLYAWDISGGEISIISQEIINMSKPPLKKDSQKYTLLITKKFGENIENIDKKIASYLENWNLDDLG
SIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNKKTPSFINGILSKLSKDIYNV

Sequences:

>Translated_139_residues
MKDIRARAREIAFRSLYAWDISGGEISIISQEIINMSKPPLKKDSQKYTLLITKKFGENIENIDKKIASYLENWNLDDLG
SIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNKKTPSFINGILSKLSKDIYNV
>Mature_139_residues
MKDIRARAREIAFRSLYAWDISGGEISIISQEIINMSKPPLKKDSQKYTLLITKKFGENIENIDKKIASYLENWNLDDLG
SIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNKKTPSFINGILSKLSKDIYNV

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15933; Mature: 15933

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDIRARAREIAFRSLYAWDISGGEISIISQEIINMSKPPLKKDSQKYTLLITKKFGENI
CCHHHHHHHHHHHHHHHEEECCCCEEHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHCCCH
ENIDKKIASYLENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNKK
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
TPSFINGILSKLSKDIYNV
CHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKDIRARAREIAFRSLYAWDISGGEISIISQEIINMSKPPLKKDSQKYTLLITKKFGENI
CCHHHHHHHHHHHHHHHEEECCCCEEHHHHHHHHCCCCCCCCCCCCEEEEEEEHHHCCCH
ENIDKKIASYLENWNLDDLGSIEKAILRTAFTELLYIKPKKNIQAIIDYIEIASNYGNKK
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
TPSFINGILSKLSKDIYNV
CHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA