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The map label for this gene is exbD [H]

Identifier: 195952778

GI number: 195952778

Start: 349993

End: 350388

Strand: Direct

Name: exbD [H]

Synonym: HY04AAS1_0400

Alternate gene names: 195952778

Gene position: 349993-350388 (Clockwise)

Preceding gene: 195952777

Following gene: 195952779

Centisome position: 22.44

GC content: 32.32

Gene sequence:

>396_bases
ATGAAAGAATTTGACCAAGATAAAGAGATATCCGAAATAAACATGACCCCTTTTGTGGATATTGTGCTTGTGATACTTAT
AATATTTATGGCTACCGCCACTTTTATGGTGGAAGGTAAAATTCCAGTAAATCTTCCAAAAGCTAAAACTTCAGAACGAA
CCACCGTATCTACAAAACCTGTAGTTGTGGCTATAAAAAAAGACGGTACAATACTAATAGATAATAAAGTTATAAGCGAT
AATTTAGAAAGTGCTTTATCAAAAGTGGCTAATAAAGATTCTACCATAGTGTTACAGGCTTCTAAGGATACACCTTTTCA
AAATGTAGTAAGTGTAATAGATGCTTGCAGAGAGCTTGGTATAAATAAGTATATGATAGAAACAAAGAAAGAATGA

Upstream 100 bases:

>100_bases
ATGGGGCTTTTTGTGGCTATTCCTTCTGTTGTTGCTTATAATTATTTTGTAAGAAAGATGAAATACTTAGTCTTGCTACA
TGAAAGCAAAGGGAAAATCC

Downstream 100 bases:

>100_bases
CACCACGTCTTAAAAGTCGCCAAAAAGAGTATTTTATTTTAGGTATTTTGATTTCTTTACTACTTCATATTTGGCTTTTA
ATAGCTTTTATCCATATGAA

Product: Biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKEFDQDKEISEINMTPFVDIVLVILIIFMATATFMVEGKIPVNLPKAKTSERTTVSTKPVVVAIKKDGTILIDNKVISD
NLESALSKVANKDSTIVLQASKDTPFQNVVSVIDACRELGINKYMIETKKE

Sequences:

>Translated_131_residues
MKEFDQDKEISEINMTPFVDIVLVILIIFMATATFMVEGKIPVNLPKAKTSERTTVSTKPVVVAIKKDGTILIDNKVISD
NLESALSKVANKDSTIVLQASKDTPFQNVVSVIDACRELGINKYMIETKKE
>Mature_131_residues
MKEFDQDKEISEINMTPFVDIVLVILIIFMATATFMVEGKIPVNLPKAKTSERTTVSTKPVVVAIKKDGTILIDNKVISD
NLESALSKVANKDSTIVLQASKDTPFQNVVSVIDACRELGINKYMIETKKE

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=125, Percent_Identity=34.4, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14503; Mature: 14503

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEFDQDKEISEINMTPFVDIVLVILIIFMATATFMVEGKIPVNLPKAKTSERTTVSTKP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEECCCC
VVVAIKKDGTILIDNKVISDNLESALSKVANKDSTIVLQASKDTPFQNVVSVIDACRELG
EEEEEECCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
INKYMIETKKE
CCEEEEEECCC
>Mature Secondary Structure
MKEFDQDKEISEINMTPFVDIVLVILIIFMATATFMVEGKIPVNLPKAKTSERTTVSTKP
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEECCCC
VVVAIKKDGTILIDNKVISDNLESALSKVANKDSTIVLQASKDTPFQNVVSVIDACRELG
EEEEEECCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC
INKYMIETKKE
CCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]