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The map label for this gene is qseB [H]

Identifier: 195952759

GI number: 195952759

Start: 335292

End: 335993

Strand: Direct

Name: qseB [H]

Synonym: HY04AAS1_0381

Alternate gene names: 195952759

Gene position: 335292-335993 (Clockwise)

Preceding gene: 195952758

Following gene: 195952760

Centisome position: 21.5

GC content: 34.47

Gene sequence:

>702_bases
ATGAAGGTTCTTATAGTAGAAGACAATATAGACTTAGCACTTTCTATAAAAGATATTATAAGAAGCAAAGGATGGCTTGC
GGATTTTGTATCAAACTTTGAAGATGCCAAATATGCTACAAAAGACAAGTCTTATGATATAGTAATACTGGATTTGATGC
TTGGTCCTAAAAATGGTATTGAGCTTTTAAAAAATGCTAGAGAAGAAAATTTAAAAACACCGTTTTTGATACTTACCGCA
AAAGACGGTATAAACGATAAATTAACCGCTTTCAACATAGGAGCCGATGATTATCTTACAAAGCCTTTTGATATGAAAGA
GCTTCTTGCAAGGATAGAAGCCATTGTAAGAAGAACCAGACAAACCGGTAGCGCTGAGTTAATATGCAATAAACTTGTGC
TTGATACTTCTAATTTTACAATTCAAATAGATGGTAAGGTGATACCAGCTACTAAAAAACAATTTTTGATATTAGAAAAG
CTTATTTCTAACGTTGGAAGAGTTGTAACAGTAGAACAGCTTCTTAGTTATGCGTGGGGAATAGACGAAGAGCCATCTTC
TTTTTCTTTGAGGTCTCATATTAGAACAATCAGAAGGCTTATAGATGGCTCCGGATGTCAGATAAGGACAGTCTATGGCA
TAGGATATTCTATAGAACCCAAAGATAGCTCCGGTAAAATAGAAGAAACAGATTGGGATTAG

Upstream 100 bases:

>100_bases
TGCTGGACAATCAATCCAACGTAGTGCAACAGCTATTGGGCGAAGTTTCAAATACAAACAACAATCCGCCAAACACAGGA
GAAAAATTAAACGTAAAGGC

Downstream 100 bases:

>100_bases
AAGAGAAAAAAGAAAATACCCTTGCCTATCTCACCGTAGTATATAGTCTGGTTATTTTTGCTATAGTTTTTATATTTTCT
ATATCGTCGTATTTAGCTTT

Product: winged helix family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKVLIVEDNIDLALSIKDIIRSKGWLADFVSNFEDAKYATKDKSYDIVILDLMLGPKNGIELLKNAREENLKTPFLILTA
KDGINDKLTAFNIGADDYLTKPFDMKELLARIEAIVRRTRQTGSAELICNKLVLDTSNFTIQIDGKVIPATKKQFLILEK
LISNVGRVVTVEQLLSYAWGIDEEPSSFSLRSHIRTIRRLIDGSGCQIRTVYGIGYSIEPKDSSGKIEETDWD

Sequences:

>Translated_233_residues
MKVLIVEDNIDLALSIKDIIRSKGWLADFVSNFEDAKYATKDKSYDIVILDLMLGPKNGIELLKNAREENLKTPFLILTA
KDGINDKLTAFNIGADDYLTKPFDMKELLARIEAIVRRTRQTGSAELICNKLVLDTSNFTIQIDGKVIPATKKQFLILEK
LISNVGRVVTVEQLLSYAWGIDEEPSSFSLRSHIRTIRRLIDGSGCQIRTVYGIGYSIEPKDSSGKIEETDWD
>Mature_233_residues
MKVLIVEDNIDLALSIKDIIRSKGWLADFVSNFEDAKYATKDKSYDIVILDLMLGPKNGIELLKNAREENLKTPFLILTA
KDGINDKLTAFNIGADDYLTKPFDMKELLARIEAIVRRTRQTGSAELICNKLVLDTSNFTIQIDGKVIPATKKQFLILEK
LISNVGRVVTVEQLLSYAWGIDEEPSSFSLRSHIRTIRRLIDGSGCQIRTVYGIGYSIEPKDSSGKIEETDWD

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=224, Percent_Identity=37.0535714285714, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1790552, Length=219, Percent_Identity=36.0730593607306, Blast_Score=137, Evalue=6e-34,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=33.0316742081448, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082012, Length=219, Percent_Identity=31.9634703196347, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=30.9734513274336, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=28.6363636363636, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=26.9230769230769, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786784, Length=231, Percent_Identity=30.3030303030303, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=31.2775330396476, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=29.2237442922374, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=28.0542986425339, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=29.2576419213974, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787229, Length=181, Percent_Identity=25.414364640884, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790437, Length=118, Percent_Identity=27.9661016949153, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26230; Mature: 26230

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLIVEDNIDLALSIKDIIRSKGWLADFVSNFEDAKYATKDKSYDIVILDLMLGPKNGI
CEEEEEECCCCEEEEHHHHHCCCCHHHHHHCCHHHCHHCCCCCCCCEEEEEEEECCCCHH
ELLKNAREENLKTPFLILTAKDGINDKLTAFNIGADDYLTKPFDMKELLARIEAIVRRTR
HHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHH
QTGSAELICNKLVLDTSNFTIQIDGKVIPATKKQFLILEKLISNVGRVVTVEQLLSYAWG
CCCCHHHEEEEEEEECCCEEEEECCEEECCCHHHHHHHHHHHHHCCCEEEHHHHHHHHCC
IDEEPSSFSLRSHIRTIRRLIDGSGCQIRTVYGIGYSIEPKDSSGKIEETDWD
CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MKVLIVEDNIDLALSIKDIIRSKGWLADFVSNFEDAKYATKDKSYDIVILDLMLGPKNGI
CEEEEEECCCCEEEEHHHHHCCCCHHHHHHCCHHHCHHCCCCCCCCEEEEEEEECCCCHH
ELLKNAREENLKTPFLILTAKDGINDKLTAFNIGADDYLTKPFDMKELLARIEAIVRRTR
HHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHH
QTGSAELICNKLVLDTSNFTIQIDGKVIPATKKQFLILEKLISNVGRVVTVEQLLSYAWG
CCCCHHHEEEEEEEECCCEEEEECCEEECCCHHHHHHHHHHHHHCCCEEEHHHHHHHHCC
IDEEPSSFSLRSHIRTIRRLIDGSGCQIRTVYGIGYSIEPKDSSGKIEETDWD
CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]