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The map label for this gene is nirF [H]

Identifier: 195952720

GI number: 195952720

Start: 301395

End: 302474

Strand: Direct

Name: nirF [H]

Synonym: HY04AAS1_0342

Alternate gene names: 195952720

Gene position: 301395-302474 (Clockwise)

Preceding gene: 195952719

Following gene: 195952721

Centisome position: 19.33

GC content: 34.63

Gene sequence:

>1080_bases
ATGTTTTATCTGATATTTTTCGTTTCATTGCTGATTGGCTTTGTCAGTTCTTTTGGTAGCCAATATTACGTAGTAGAAAG
ATCAAGAGGATCTCTTGGTGTTATAGAAAACAGAGAATATGTTGGAGAGATAAAGCATCTTGGTGATATGAACCATGCCA
TAGTAAAATATGGAAAATGCTATGCTTACGTGATTAGTAGAGACGGAGTACTATCAAAGATAGATCCAAGAAATAATCAT
ATTGTGGCTCAAACCAAAGCGGGCAATAGCTCTATTGATTTTTACATAACAAAGCATCTAATAGTGGTGGCAAATTACGA
TCCAGATACAGTAGCTATCTTCAATCACAATTTAAAGTTGATAAAATCCATAAAAACAGGCTCTAGAAATGTGGGTATCA
AAGTATACAAACATCTTATTTTCGTGCTTTTGATGGATAAAAATGCCATTCTTGTCTTAGATGATAAAAACTTCTCAAAA
AAGAAAGTCATAAAAAATGTAGGGGTTATGCCGTTTGATGCTATTTTAGACGGCGATAGATACATTGTGTCTTTTTTTGT
GAACGATGATATTGGTATATTGGATACCGAAAATATGAAATACAGGATTATACACTACGGAACAGTTTCAAAACCGATAT
TAAAAATACCTCATTACGGACTATTTTCCATGTGGCATGGGCTTGTATTTATGCCCCTTGTGGGAGAAAGGGCCATTGGC
GTTGTAAATATAGATAAAGGGACTCTTGAGCATAAGATCCCATTGCTTGGATATCCTGTTTTTGTAATAGTCTCGCCGAA
AGATAATCTTATAGCTGTAAATTACAGCGGAGATAACGATGATTACATGAGCTTTATTGATCCTTTCAAGATGAAACTCA
TCAAAAATATGAAGGTTGCTAGAAGGATAATGCATATGAGGTTCTCAAAAGATGGTAGGTTTTTGTATATATCTGACTAT
TTCGACAACAGGGTAAAAATCCTTGATACTTCAGATTTTAAAATAATAAAAGAGATAACCGTACCTCAACCCTCAGGTAT
CTTCAGATTACCAGAAAGACTGGAGGAGTGTCATGGGTAA

Upstream 100 bases:

>100_bases
CAGGCAAATGTCAACAATGTCAATTTATAAACATATGCAACGGTGGGTCTAGGGCAAGAGCTTTCAATGTTTACAACGAT
TATTCCATGGAGGATCCGTC

Downstream 100 bases:

>100_bases
AGTATATTTAGTGGGTGCTGGTCCCGGTGATCCTGAGCTACTTACTCTAAAAGCAATAAAAGCCCTTGAGCGATCTGATG
TTGTGTTGTATGACAAGCTT

Product: cytochrome d1 heme region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MFYLIFFVSLLIGFVSSFGSQYYVVERSRGSLGVIENREYVGEIKHLGDMNHAIVKYGKCYAYVISRDGVLSKIDPRNNH
IVAQTKAGNSSIDFYITKHLIVVANYDPDTVAIFNHNLKLIKSIKTGSRNVGIKVYKHLIFVLLMDKNAILVLDDKNFSK
KKVIKNVGVMPFDAILDGDRYIVSFFVNDDIGILDTENMKYRIIHYGTVSKPILKIPHYGLFSMWHGLVFMPLVGERAIG
VVNIDKGTLEHKIPLLGYPVFVIVSPKDNLIAVNYSGDNDDYMSFIDPFKMKLIKNMKVARRIMHMRFSKDGRFLYISDY
FDNRVKILDTSDFKIIKEITVPQPSGIFRLPERLEECHG

Sequences:

>Translated_359_residues
MFYLIFFVSLLIGFVSSFGSQYYVVERSRGSLGVIENREYVGEIKHLGDMNHAIVKYGKCYAYVISRDGVLSKIDPRNNH
IVAQTKAGNSSIDFYITKHLIVVANYDPDTVAIFNHNLKLIKSIKTGSRNVGIKVYKHLIFVLLMDKNAILVLDDKNFSK
KKVIKNVGVMPFDAILDGDRYIVSFFVNDDIGILDTENMKYRIIHYGTVSKPILKIPHYGLFSMWHGLVFMPLVGERAIG
VVNIDKGTLEHKIPLLGYPVFVIVSPKDNLIAVNYSGDNDDYMSFIDPFKMKLIKNMKVARRIMHMRFSKDGRFLYISDY
FDNRVKILDTSDFKIIKEITVPQPSGIFRLPERLEECHG
>Mature_359_residues
MFYLIFFVSLLIGFVSSFGSQYYVVERSRGSLGVIENREYVGEIKHLGDMNHAIVKYGKCYAYVISRDGVLSKIDPRNNH
IVAQTKAGNSSIDFYITKHLIVVANYDPDTVAIFNHNLKLIKSIKTGSRNVGIKVYKHLIFVLLMDKNAILVLDDKNFSK
KKVIKNVGVMPFDAILDGDRYIVSFFVNDDIGILDTENMKYRIIHYGTVSKPILKIPHYGLFSMWHGLVFMPLVGERAIG
VVNIDKGTLEHKIPLLGYPVFVIVSPKDNLIAVNYSGDNDDYMSFIDPFKMKLIKNMKVARRIMHMRFSKDGRFLYISDY
FDNRVKILDTSDFKIIKEITVPQPSGIFRLPERLEECHG

Specific function: Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR003143
- InterPro:   IPR015943 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41083; Mature: 41083

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFYLIFFVSLLIGFVSSFGSQYYVVERSRGSLGVIENREYVGEIKHLGDMNHAIVKYGKC
CEEHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECHHHHHHHHHCCCCCHHHHHHCCE
YAYVISRDGVLSKIDPRNNHIVAQTKAGNSSIDFYITKHLIVVANYDPDTVAIFNHNLKL
EEEEEECCCCEEECCCCCCEEEEEECCCCCCEEEEEEEEEEEEEECCCCEEEEEECCEEE
IKSIKTGSRNVGIKVYKHLIFVLLMDKNAILVLDDKNFSKKKVIKNVGVMPFDAILDGDR
EEHHCCCCCCCCHHHHHHEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCCHHEECCCE
YIVSFFVNDDIGILDTENMKYRIIHYGTVSKPILKIPHYGLFSMWHGLVFMPLVGERAIG
EEEEEEECCCCCEEECCCCEEEEEEECCCCCCCEECCCCCHHHHHHHHEEEEECCCCEEE
VVNIDKGTLEHKIPLLGYPVFVIVSPKDNLIAVNYSGDNDDYMSFIDPFKMKLIKNMKVA
EEECCCCCHHCCCCEECCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
RRIMHMRFSKDGRFLYISDYFDNRVKILDTSDFKIIKEITVPQPSGIFRLPERLEECHG
HHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MFYLIFFVSLLIGFVSSFGSQYYVVERSRGSLGVIENREYVGEIKHLGDMNHAIVKYGKC
CEEHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECHHHHHHHHHCCCCCHHHHHHCCE
YAYVISRDGVLSKIDPRNNHIVAQTKAGNSSIDFYITKHLIVVANYDPDTVAIFNHNLKL
EEEEEECCCCEEECCCCCCEEEEEECCCCCCEEEEEEEEEEEEEECCCCEEEEEECCEEE
IKSIKTGSRNVGIKVYKHLIFVLLMDKNAILVLDDKNFSKKKVIKNVGVMPFDAILDGDR
EEHHCCCCCCCCHHHHHHEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCCHHEECCCE
YIVSFFVNDDIGILDTENMKYRIIHYGTVSKPILKIPHYGLFSMWHGLVFMPLVGERAIG
EEEEEEECCCCCEEECCCCEEEEEEECCCCCCCEECCCCCHHHHHHHHEEEEECCCCEEE
VVNIDKGTLEHKIPLLGYPVFVIVSPKDNLIAVNYSGDNDDYMSFIDPFKMKLIKNMKVA
EEECCCCCHHCCCCEECCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
RRIMHMRFSKDGRFLYISDYFDNRVKILDTSDFKIIKEITVPQPSGIFRLPERLEECHG
HHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7588711; 2001732 [H]