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The map label for this gene is rpmD

Identifier: 195952661

GI number: 195952661

Start: 249276

End: 249455

Strand: Direct

Name: rpmD

Synonym: HY04AAS1_0283

Alternate gene names: 195952661

Gene position: 249276-249455 (Clockwise)

Preceding gene: 195952660

Following gene: 195952662

Centisome position: 15.98

GC content: 37.22

Gene sequence:

>180_bases
ATGAAGCTTAAGATAGTTTTGAGAAGAGGATTGGCTGGCAAAGATAAAGCAAAAAAAGAAGCTGTTAGGAGTTTAGGTCT
AAAGAAAGTTGGTGAAACCGTTATATTAGAGAAAAATCCTATGGTATGTGGAAACCTTGAAAAGGTAAAACACCTTGTAT
GCGTGGAGGAGCTGTCATGA

Upstream 100 bases:

>100_bases
TGCGCTTTTAAAATTAAGAGATATAGATGCAATAGCTAAAGTAAAAGGTGCAACTGTAGAGGATTTGAGAGAAAGATACA
ACATATACGCGAGGTGATTT

Downstream 100 bases:

>100_bases
ATTTGCATGAGTTAAAACCAAATGAAAGCGCTGTAAAAGATAAAAAGCGTATAGGTAGGGGTTTAGGTTCTGGTAAAGGT
AAAACAGCAGGCAGAGGATA

Product: 50S ribosomal protein L30

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 59; Mature: 59

Protein sequence:

>59_residues
MKLKIVLRRGLAGKDKAKKEAVRSLGLKKVGETVILEKNPMVCGNLEKVKHLVCVEELS

Sequences:

>Translated_59_residues
MKLKIVLRRGLAGKDKAKKEAVRSLGLKKVGETVILEKNPMVCGNLEKVKHLVCVEELS
>Mature_59_residues
MKLKIVLRRGLAGKDKAKKEAVRSLGLKKVGETVILEKNPMVCGNLEKVKHLVCVEELS

Specific function: Unknown

COG id: COG1841

COG function: function code J; Ribosomal protein L30/L7E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL30_HYDS0 (B4U762)

Other databases:

- EMBL:   CP001130
- RefSeq:   YP_002120951.1
- ProteinModelPortal:   B4U762
- SMR:   B4U762
- GeneID:   6743077
- GenomeReviews:   CP001130_GR
- KEGG:   hya:HY04AAS1_0283
- HOGENOM:   HBG690556
- OMA:   LEKNPMV
- ProtClustDB:   PRK05611
- GO:   GO:0006412
- HAMAP:   MF_01371_B
- InterPro:   IPR005996
- InterPro:   IPR016082
- Gene3D:   G3DSA:3.30.1390.20
- PIRSF:   PIRSF002211
- TIGRFAMs:   TIGR01308

Pfam domain/function: PF00327 Ribosomal_L30; SSF55129 Ribosomal_L30

EC number: NA

Molecular weight: Translated: 6529; Mature: 6529

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: PS00634 RIBOSOMAL_L30

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKIVLRRGLAGKDKAKKEAVRSLGLKKVGETVILEKNPMVCGNLEKVKHLVCVEELS
CCEEEEECCCCCCCCHHHHHHHHHCCHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLKIVLRRGLAGKDKAKKEAVRSLGLKKVGETVILEKNPMVCGNLEKVKHLVCVEELS
CCEEEEECCCCCCCCHHHHHHHHHCCHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA