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The map label for this gene is ybfM [H]

Identifier: 194738352

GI number: 194738352

Start: 815300

End: 816706

Strand: Direct

Name: ybfM [H]

Synonym: SeSA_A0843

Alternate gene names: 194738352

Gene position: 815300-816706 (Clockwise)

Preceding gene: 194737723

Following gene: 194734717

Centisome position: 17.31

GC content: 51.46

Gene sequence:

>1407_bases
ATGCGTACGTTTAGTGGCAAACGTAGTACGCTGGCTCTGGCTATCGCCGGTATCACAGCAATGTCGGGGTGGATCGTTGT
TCCGCAGGCGCAAGCCTCCGGCTTTTTCGACGACTCCACGTTAACGGGCGGCATCTATTATTGGCAGCGTGAACGCGATC
GCAAAGATGTGACCGACGGCGACAAATATAAAACTAACCTTTCTCATGCGACCTGGAACGCTAACCTGGATTTTCAGTCT
GGTTACGCTGCGGATATGTTCGGTCTGGATATCGCAGCGTTTACCGCGATTGAAATGGCAGAAAACGGCGACAGCGGTCA
TCCAAACGAAATTGCCTTCTCGAAAAAGAATAAAGGCTACGACGAAGACTATTCCGGCGATAAGAGTGGTATCAGTCTTT
ATAAAGCCGCCGCGAAATTTAAATATGGCCCGGTCTGGGCGCGCGCCGGTTATATTCAGCCTACCGGTCAGACGCTGTTA
GCGCCGCACTGGAGTTTTATGCCGGGTACTTATCAGGGGGCGGAAGCCGGCGCCAGTTTTGACTATGGCGATGCGGGCGC
GTTAAGTTTTTCCTACATGTGGACTAACGAATATAAAGCGCCGTGGCATACCGAAATGGATAAGTTTTATCAGGCGGATA
AAAAAACCAATGTGGATTATCTCCACTCCATCGGCGCGAAGTACGACTTCAAAAATGATCTGGTGCTGGAAGCGGCGTTT
GGTCAGTCCGAAGGCTATGTCGATCAATATTTCGCGAAGGCCAGCTATAAATTTGATTTAGGCGGCAATCCGTTCACCAC
CAGTTACCAGTTCTACGGCGCGCGCGATAAAGTAGACGATCGCAGCGTGAATGATATTTACGACGGTACGGCCTGGCTGC
AGGCGTTGACCTTCGGCTACAAAGTCGCGGAAGTGGTTGACCTGCGTCTGGAGGGCACCTGGGTGAAAGCGGACGGTCAG
CAGGGCTATTTTCTGCAACGTATGACGCCAACCTACGCCTCTTCAAACGGTCGTCTGGATATCTGGTGGGATAACCGCTC
CGACTTTAACGCTAACGGTGAAAAGGCGGTTTTCTTCGGCGCGATGTATGACCTGAAAAACTGGAATCTGCCGGGCTGGG
CTGTGGGCGCGTCTTATGTTTACGCCTGGGATGCTAAACCGGCAACCTGGCAAAGTAACCCGGATGCTTACTACGACAAA
AACCGCACTATCGAAGAGTCCTCATACAGTCTGGATGCGGTTTATACCCTGCAGGAGGGGCGTGCCAAAGGCACCATGTT
CAAGCTGCACTTCACCGAATATGACAACCACTCCAATATTCCAAGCTGGGGCGGTGGTTACGGCAACATCTTCCAGGATG
AGCGTGACGTGAAATTTATTGTTATTGCGCCATTCACTATTTTCTGA

Upstream 100 bases:

>100_bases
TTAACGTAGTAAATGAGGTTTCTCAGCGCTACTTTTTATTTTTATTTTTTCGCTGTTCGCTTTTGTCGGCAGCAATTTAT
ACGTCAAAGAGGATTAACTT

Downstream 100 bases:

>100_bases
TGTCAGATGCGGCAGGCTGCCGGTCTGCCGCGCTGTTGAGGAACGACCTATGAAAAAAATTTTACTCATCGCCAGCATGA
CCGCCGGTTTGACGGCCTGT

Product: outer membrane porin, OprD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF

Sequences:

>Translated_468_residues
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF
>Mature_468_residues
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQS
GYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQ
QGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDK
NRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786897, Length=468, Percent_Identity=91.2393162393162, Blast_Score=894, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 52664; Mature: 52664

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDG
CCCCCCCCCEEEEEEECHHHHCCEEEEECHHCCCCCCCCCEECCEEEEECCCCCCCCCCC
DKYKTNLSHATWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGY
CCEEECCCEEEEECCCCCCCCCCHHHHCCHHHHHEEEEHHCCCCCCCCCCEEEECCCCCC
DEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGASF
CCCCCCCCCCHHHHHHHHHCCCCCEEEECCEECCCCCEEECCCCCCCCCCCCCCCCCCCC
DYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEEEC
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGY
CCCCCCHHHHHHHCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHCHHHHHHHHHHCC
KVAEVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG
EEEEEEEEEEECEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEE
AMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDKNRTIEESSYSLDAVYTLQEG
EEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCCCEECCCCEECCCCCCEEEEEEEECC
RAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEC
>Mature Secondary Structure
MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGGIYYWQRERDRKDVTDG
CCCCCCCCCEEEEEEECHHHHCCEEEEECHHCCCCCCCCCEECCEEEEECCCCCCCCCCC
DKYKTNLSHATWNANLDFQSGYAADMFGLDIAAFTAIEMAENGDSGHPNEIAFSKKNKGY
CCEEECCCEEEEECCCCCCCCCCHHHHCCHHHHHEEEEHHCCCCCCCCCCEEEECCCCCC
DEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLLAPHWSFMPGTYQGAEAGASF
CCCCCCCCCCHHHHHHHHHCCCCCEEEECCEECCCCCEEECCCCCCCCCCCCCCCCCCCC
DYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNVDYLHSIGAKYDFKNDLVLEAAF
CCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEEEC
GQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARDKVDDRSVNDIYDGTAWLQALTFGY
CCCCCCHHHHHHHCEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHCHHHHHHHHHHCC
KVAEVVDLRLEGTWVKADGQQGYFLQRMTPTYASSNGRLDIWWDNRSDFNANGEKAVFFG
EEEEEEEEEEECEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEE
AMYDLKNWNLPGWAVGASYVYAWDAKPATWQSNPDAYYDKNRTIEESSYSLDAVYTLQEG
EEEECCCCCCCCEEECCEEEEEECCCCCCCCCCCCCEECCCCEECCCCCCEEEEEEEECC
RAKGTMFKLHFTEYDNHSNIPSWGGGYGNIFQDERDVKFIVIAPFTIF
CCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]