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The map label for this gene is phnR [H]

Identifier: 194738336

GI number: 194738336

Start: 494888

End: 495607

Strand: Reverse

Name: phnR [H]

Synonym: SeSA_A0490

Alternate gene names: 194738336

Gene position: 495607-494888 (Counterclockwise)

Preceding gene: 194736082

Following gene: 194736561

Centisome position: 10.52

GC content: 58.89

Gene sequence:

>720_bases
ATGAAATCTATCCCGGGCGATATCCCGCAGTACCTGTTGATCAAGGCGCAGCTTCAGGCGCGTATTCAGAGCGGTGCGTT
GAAAAGCGGTGATAAACTGCCGTCTGAACGCGAACTGTGCGCGATCTTCAACACCACGCGCATTACTATTCGCGAAAGCC
TGGCGCAGCTGGAGTCCAGTGGGCTTATCTGGCGCGCCGATCGTCGCGGTTGGTTCGTTACGCCGGAACGCCTGTGGCTG
GATCCGACCCAGAACACCAACTTCCATAAGCTTTGCCGCGAGCAGGGGCGGGAGCCAAAAACCGCGCTACTGAGCGGCGT
GTTAACCACCGTGCCTGTCGAGGTCATGGAGTCCCTCCAGCTCCAGCCGTTTGATCAAATTTATCTGCTGACCCGTCTGC
GTTACGCCGATGGCCGCGCCGTGTGCTACTGCGAAAACCATTGTTTGCCCGCCCGCGTGCCTGAGCTGCTGCAGTACGAT
CTCAACGGCAGCCTGACCGAGGTATACGAGTCGCACTACAACCTCGTCTATACCAGCATGCATCTGTCATTCTACCCCAC
CGCCATGCCTGCGCAGGCCGCACAGGCGCTGGGAGTTATGGAAGGGCGCCCGGCGCTGTTGCTGCGCCGTCTGAACTACG
ATCAACACGGGCGAGTGCTGGATCTGGATATCGAATACTGGCGTCACGACAGCCTGCGCATTGAGGTAGATACCCACTAG

Upstream 100 bases:

>100_bases
GACGATCTTTGCCGCGACGGGTCAAAGAGAAAATCGCGCTGCAACAAAAAATTCATCTCTGCTTGTATAATGGCGGCAGG
CAAAACGGAAGCGAGTAAGC

Downstream 100 bases:

>100_bases
CGGATGCGCCGGATGTTGGCTGCGAGCCTTATCCGGCCTGTCAATCGTATCGTCTCACGGCTATCCGGATAAGCGCAGCA
TCATCCAGCGTGGACTGATT

Product: transcriptional regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLIWRADRRGWFVTPERLWL
DPTQNTNFHKLCREQGREPKTALLSGVLTTVPVEVMESLQLQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYD
LNGSLTEVYESHYNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGRVLDLDIEYWRHDSLRIEVDTH

Sequences:

>Translated_239_residues
MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLIWRADRRGWFVTPERLWL
DPTQNTNFHKLCREQGREPKTALLSGVLTTVPVEVMESLQLQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYD
LNGSLTEVYESHYNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGRVLDLDIEYWRHDSLRIEVDTH
>Mature_239_residues
MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLIWRADRRGWFVTPERLWL
DPTQNTNFHKLCREQGREPKTALLSGVLTTVPVEVMESLQLQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYD
LNGSLTEVYESHYNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGRVLDLDIEYWRHDSLRIEVDTH

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=224, Percent_Identity=32.1428571428571, Blast_Score=133, Evalue=9e-33,
Organism=Escherichia coli, GI1788418, Length=229, Percent_Identity=25.3275109170306, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786950, Length=218, Percent_Identity=24.3119266055046, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790118, Length=226, Percent_Identity=23.0088495575221, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082252, Length=231, Percent_Identity=21.2121212121212, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27472; Mature: 27472

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESS
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
GLIWRADRRGWFVTPERLWLDPTQNTNFHKLCREQGREPKTALLSGVLTTVPVEVMESLQ
CCEEEECCCCEEECCHHEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
LQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYDLNGSLTEVYESHYNLVYTSM
CCCHHHHHHHHHHEECCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHCCEEEEEE
HLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGRVLDLDIEYWRHDSLRIEVDTH
EEEECCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEHHEECCCCEEEEEECC
>Mature Secondary Structure
MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESS
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
GLIWRADRRGWFVTPERLWLDPTQNTNFHKLCREQGREPKTALLSGVLTTVPVEVMESLQ
CCEEEECCCCEEECCHHEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
LQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYDLNGSLTEVYESHYNLVYTSM
CCCHHHHHHHHHHEECCCCEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHCCEEEEEE
HLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGRVLDLDIEYWRHDSLRIEVDTH
EEEECCCCCCHHHHHHHCCCCCCHHHHHHHCCCCCCCCEEEEEHHEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA