| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is malS [H]
Identifier: 194738155
GI number: 194738155
Start: 3728725
End: 3730752
Strand: Direct
Name: malS [H]
Synonym: SeSA_A3862
Alternate gene names: 194738155
Gene position: 3728725-3730752 (Clockwise)
Preceding gene: 194736118
Following gene: 194738090
Centisome position: 79.18
GC content: 55.77
Gene sequence:
>2028_bases ATGAAACTTGCCGCCTTCGCTCTGACGCTGATACCCGGTATCGCGATCGCCTCATCATGGACCTCGCCCGGTTTTCCGAC GTTCTCGACGCAGGAAACCGGACGCTTTACCAGCCATGCTGCATTAACAAAAGGTACACGCGCGTTAACGCTCCATATTG ACCAGCAGTGCTGGCAGCCCTCCGGCGCCATAAAACTCAACCAGATGTTGTCGTTAAAACCCTGCGAAGGCGCGCCGCCG CAATGGCGTTTGTTTAAAGATGGCGACTATACAATAACGGTAGATACCCGCTCCGGTACGCCGACCCTGTTGTTATCGAT AAAAACTGAACCTGAACGCACCACACAGCTCACCTACCAGTGTCCCGTCTGGGATGGTTCGCCGCTCACGCTGGATGTTA GCCAGACCTTTCCGGAAGGGACGGTAGTGCGCGATTATTACAGTGGTCAAACCGATACCGTCCAAAACGGGCAAATCACG CTGCAACCTGCCGACAGCCACGGGCTTTTATTGCTGGAACGCGCGGAAACCCATGCATCAGCGCCTTTTAACTGGCGCAA CGCCACCGTTTATTTTGTGCTTACGGATCGCTTTCGCAATGGCGATCCAACCAACGACCACAGCTATGGTCGCCATAAGG ATGGTATGCAAGAGATTGGCACTTTCCACGGCGGCGATTTGCGCGGGTTGACGAGTCAACTGGACTATCTACAGCAATTA GGCGTGAACGCCTTGTGGATAAGCTCGCCGTTTGAACAGATCCACGGCTGGGTCGGCGGCGGGACAAAAGGCGATTTTCC TCATTACGCCTATCACGGCTATTACACTCAGGACTGGACGACGCTGGATGCCAATATGGGCAGCGAAGCCGATCTCCGCG CGCTGGTCGACGGCGCGCACCAGCGCGGCATCCGTATTTTATTTGACGTAGTAATGAATCATGCCGGTTACGCCACGCTG GCGGATATGCAGGAGTATCAGTTCGGCGCGCTCTATTTATCCGGCGCGGAACGGCAAAAAATTCTCGGCGATCGCTGGAC AAACTGGCGACCCGCCGCCGGACAAAGCTGGCACAGCTTTAACGACTACATCAACTTCAGCGACAGCGCCGCCTGGGAAA AATGGTGGGGGAAAAAGTGGATTCGTACCGATATTGGCGACTACGACAGTCCGGGATTTGACGATTTAACCCTGTCGCTG GCCTTTCTGCCGGATATAAAAACGGAATCTACCACGCCTTCCGGCCTACCCGCGTTCTATGCCAACAAACCCGATACTAA AGCAAAGTTCATTGAAGGCTATACGCCACGGGATTATCTGACTCACTGGTTAAGCCAGTGGGTGCATGATTACGGCATTG ACGGGTTCCGGGTCGATACTGCCAAAAATGTTGAGCTTCCTGCCTGGCAACAGCTAAAAACCCAGGCCAGCGCGGCATTA CGCGAGTGGAAGCAGGCCAATCCGGACAAAGCGCTGGATGATAGCCCGTTCTGGATGACTGGCGAAGCGTGGGGCCACGG CGTCATGAAAAGTGACTATTATCGCTATGGTTTCGACGCGATGATCAATTTTGATTATCAGGAGCAGGCCGCGAAAGCGG TCGATTGCCTGGCGGAAATGGGGCCAGTCTGGCAGCAGATGGCGGATAAAATGCAGGATTTCAACGTATTAAGTTACCTC TCCTCGCATGATACGCGCCTTTTCCGTGAGGGCGGTGATAAGGCGGCGGAACTGCTGCTGCTTTCGCCGGGCGCGGTGCA GATCTTTTACGGCGATGAATCCGCTCGTCCCTTCGGCCCCACCGGCTCCGACCCCCTGCAAGGCACCCGTTCAGATATGA ACTGGCAGGACGTGAGCGGAAAGTCAGCCGCAGCCGTCGCGCACTGGCAGCGTATTAGCCAGTTCCGCGCCAGACATCCC GCCATCGGCGCAGGCCAACAAACCACGCTGACGCTAAAACACGGGTACGGTTTTGTACGCCAGTACGGCGACGATACGGT GATGGTCGTCTGGGCAGGCCGCCGCTAA
Upstream 100 bases:
>100_bases TCACCCTCGCGCCTCCTCCTGCGCGACTCTCTGCGGGGGAGGAGTTCATTCGCCTAAAAACCAGGCAAGCTGATGAATAT TGCCCACAAAGGATAGCGTG
Downstream 100 bases:
>100_bases TCATGGCGCTACCGGTCCCCTCGCGTACCGGTAGCCCCTTCAAAATAAAAAACTAACCTGATAAAAATTTGTAGCATAAA ACATCAATACTACCGCCTGA
Product: periplasmic alpha-amylase precursor
Products: NA
Alternate protein names: 1,4-alpha-D-glucan glucanohydrolase [H]
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MKLAAFALTLIPGIAIASSWTSPGFPTFSTQETGRFTSHAALTKGTRALTLHIDQQCWQPSGAIKLNQMLSLKPCEGAPP QWRLFKDGDYTITVDTRSGTPTLLLSIKTEPERTTQLTYQCPVWDGSPLTLDVSQTFPEGTVVRDYYSGQTDTVQNGQIT LQPADSHGLLLLERAETHASAPFNWRNATVYFVLTDRFRNGDPTNDHSYGRHKDGMQEIGTFHGGDLRGLTSQLDYLQQL GVNALWISSPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTTLDANMGSEADLRALVDGAHQRGIRILFDVVMNHAGYATL ADMQEYQFGALYLSGAERQKILGDRWTNWRPAAGQSWHSFNDYINFSDSAAWEKWWGKKWIRTDIGDYDSPGFDDLTLSL AFLPDIKTESTTPSGLPAFYANKPDTKAKFIEGYTPRDYLTHWLSQWVHDYGIDGFRVDTAKNVELPAWQQLKTQASAAL REWKQANPDKALDDSPFWMTGEAWGHGVMKSDYYRYGFDAMINFDYQEQAAKAVDCLAEMGPVWQQMADKMQDFNVLSYL SSHDTRLFREGGDKAAELLLLSPGAVQIFYGDESARPFGPTGSDPLQGTRSDMNWQDVSGKSAAAVAHWQRISQFRARHP AIGAGQQTTLTLKHGYGFVRQYGDDTVMVVWAGRR
Sequences:
>Translated_675_residues MKLAAFALTLIPGIAIASSWTSPGFPTFSTQETGRFTSHAALTKGTRALTLHIDQQCWQPSGAIKLNQMLSLKPCEGAPP QWRLFKDGDYTITVDTRSGTPTLLLSIKTEPERTTQLTYQCPVWDGSPLTLDVSQTFPEGTVVRDYYSGQTDTVQNGQIT LQPADSHGLLLLERAETHASAPFNWRNATVYFVLTDRFRNGDPTNDHSYGRHKDGMQEIGTFHGGDLRGLTSQLDYLQQL GVNALWISSPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTTLDANMGSEADLRALVDGAHQRGIRILFDVVMNHAGYATL ADMQEYQFGALYLSGAERQKILGDRWTNWRPAAGQSWHSFNDYINFSDSAAWEKWWGKKWIRTDIGDYDSPGFDDLTLSL AFLPDIKTESTTPSGLPAFYANKPDTKAKFIEGYTPRDYLTHWLSQWVHDYGIDGFRVDTAKNVELPAWQQLKTQASAAL REWKQANPDKALDDSPFWMTGEAWGHGVMKSDYYRYGFDAMINFDYQEQAAKAVDCLAEMGPVWQQMADKMQDFNVLSYL SSHDTRLFREGGDKAAELLLLSPGAVQIFYGDESARPFGPTGSDPLQGTRSDMNWQDVSGKSAAAVAHWQRISQFRARHP AIGAGQQTTLTLKHGYGFVRQYGDDTVMVVWAGRR >Mature_675_residues MKLAAFALTLIPGIAIASSWTSPGFPTFSTQETGRFTSHAALTKGTRALTLHIDQQCWQPSGAIKLNQMLSLKPCEGAPP QWRLFKDGDYTITVDTRSGTPTLLLSIKTEPERTTQLTYQCPVWDGSPLTLDVSQTFPEGTVVRDYYSGQTDTVQNGQIT LQPADSHGLLLLERAETHASAPFNWRNATVYFVLTDRFRNGDPTNDHSYGRHKDGMQEIGTFHGGDLRGLTSQLDYLQQL GVNALWISSPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTTLDANMGSEADLRALVDGAHQRGIRILFDVVMNHAGYATL ADMQEYQFGALYLSGAERQKILGDRWTNWRPAAGQSWHSFNDYINFSDSAAWEKWWGKKWIRTDIGDYDSPGFDDLTLSL AFLPDIKTESTTPSGLPAFYANKPDTKAKFIEGYTPRDYLTHWLSQWVHDYGIDGFRVDTAKNVELPAWQQLKTQASAAL REWKQANPDKALDDSPFWMTGEAWGHGVMKSDYYRYGFDAMINFDYQEQAAKAVDCLAEMGPVWQQMADKMQDFNVLSYL SSHDTRLFREGGDKAAELLLLSPGAVQIFYGDESARPFGPTGSDPLQGTRSDMNWQDVSGKSAAAVAHWQRISQFRARHP AIGAGQQTTLTLKHGYGFVRQYGDDTVMVVWAGRR
Specific function: Since only maltooligosaccharides up to a chain length of 6 glucose units are actively transported through the cytoplasmic membrane via the membrane-bound complex of three proteins, MalF, MalG, and MalK, longer maltooligosaccharides must first be degraded
COG id: COG0366
COG function: function code G; Glycosidases
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Escherichia coli, GI1789995, Length=676, Percent_Identity=82.1005917159763, Blast_Score=1172, Evalue=0.0, Organism=Escherichia coli, GI1786604, Length=143, Percent_Identity=30.0699300699301, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014635 - InterPro: IPR006047 - InterPro: IPR006589 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00128 Alpha-amylase [H]
EC number: =3.2.1.1 [H]
Molecular weight: Translated: 75664; Mature: 75664
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLAAFALTLIPGIAIASSWTSPGFPTFSTQETGRFTSHAALTKGTRALTLHIDQQCWQP CCHHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECHHHCCC SGAIKLNQMLSLKPCEGAPPQWRLFKDGDYTITVDTRSGTPTLLLSIKTEPERTTQLTYQ CCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEE CPVWDGSPLTLDVSQTFPEGTVVRDYYSGQTDTVQNGQITLQPADSHGLLLLERAETHAS ECCCCCCCEEEEHHCCCCCCCEEEEECCCCCCEECCCEEEEEECCCCCEEEEEECCCCCC APFNWRNATVYFVLTDRFRNGDPTNDHSYGRHKDGMQEIGTFHGGDLRGLTSQLDYLQQL CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHC GVNALWISSPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTTLDANMGSEADLRALVDGAH CCCEEEECCCHHHHCCCCCCCCCCCCCCEEECCEEECCCEEEECCCCCCHHHHHHHHHHH QRGIRILFDVVMNHAGYATLADMQEYQFGALYLSGAERQKILGDRWTNWRPAAGQSWHSF HCCHHHHHHHHHCCCCCEEHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCH NDYINFSDSAAWEKWWGKKWIRTDIGDYDSPGFDDLTLSLAFLPDIKTESTTPSGLPAFY HCEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE ANKPDTKAKFIEGYTPRDYLTHWLSQWVHDYGIDGFRVDTAKNVELPAWQQLKTQASAAL CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHH REWKQANPDKALDDSPFWMTGEAWGHGVMKSDYYRYGFDAMINFDYQEQAAKAVDCLAEM HHHHHCCCCCCCCCCCCEEECHHHCCCCCCCCCEEECCEEEEECCHHHHHHHHHHHHHHH GPVWQQMADKMQDFNVLSYLSSHDTRLFREGGDKAAELLLLSPGAVQIFYGDESARPFGP CHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCC TGSDPLQGTRSDMNWQDVSGKSAAAVAHWQRISQFRARHPAIGAGQQTTLTLKHGYGFVR CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHH QYGDDTVMVVWAGRR HCCCCEEEEEECCCC >Mature Secondary Structure MKLAAFALTLIPGIAIASSWTSPGFPTFSTQETGRFTSHAALTKGTRALTLHIDQQCWQP CCHHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECHHHCCC SGAIKLNQMLSLKPCEGAPPQWRLFKDGDYTITVDTRSGTPTLLLSIKTEPERTTQLTYQ CCCEEEEEEEEECCCCCCCCCEEEEECCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEE CPVWDGSPLTLDVSQTFPEGTVVRDYYSGQTDTVQNGQITLQPADSHGLLLLERAETHAS ECCCCCCCEEEEHHCCCCCCCEEEEECCCCCCEECCCEEEEEECCCCCEEEEEECCCCCC APFNWRNATVYFVLTDRFRNGDPTNDHSYGRHKDGMQEIGTFHGGDLRGLTSQLDYLQQL CCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHC GVNALWISSPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTTLDANMGSEADLRALVDGAH CCCEEEECCCHHHHCCCCCCCCCCCCCCEEECCEEECCCEEEECCCCCCHHHHHHHHHHH QRGIRILFDVVMNHAGYATLADMQEYQFGALYLSGAERQKILGDRWTNWRPAAGQSWHSF HCCHHHHHHHHHCCCCCEEHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCCCCCCCCCCH NDYINFSDSAAWEKWWGKKWIRTDIGDYDSPGFDDLTLSLAFLPDIKTESTTPSGLPAFY HCEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE ANKPDTKAKFIEGYTPRDYLTHWLSQWVHDYGIDGFRVDTAKNVELPAWQQLKTQASAAL CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHH REWKQANPDKALDDSPFWMTGEAWGHGVMKSDYYRYGFDAMINFDYQEQAAKAVDCLAEM HHHHHCCCCCCCCCCCCEEECHHHCCCCCCCCCEEECCEEEEECCHHHHHHHHHHHHHHH GPVWQQMADKMQDFNVLSYLSSHDTRLFREGGDKAAELLLLSPGAVQIFYGDESARPFGP CHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEEECCCEEEEEECCCCCCCCCC TGSDPLQGTRSDMNWQDVSGKSAAAVAHWQRISQFRARHPAIGAGQQTTLTLKHGYGFVR CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHH QYGDDTVMVVWAGRR HCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1544897; 8041620; 9278503; 9268356 [H]