Click here to switch to the map view.

The map label for this gene is yrfF [H]

Identifier: 194737602

GI number: 194737602

Start: 3547194

End: 3549326

Strand: Direct

Name: yrfF [H]

Synonym: SeSA_A3692

Alternate gene names: 194737602

Gene position: 3547194-3549326 (Clockwise)

Preceding gene: 194734007

Following gene: 194737403

Centisome position: 75.33

GC content: 54.66

Gene sequence:

>2133_bases
ATGAGCACCATTCTGATTTTTATAGCTGCTTTGCTGGCCTGCTCTCTACTGGCAATATGGCGGTTCCGGGTAAAGTCCAG
ACGAGGGAGCTTACCGTGGATCAGCGCCTTTCAGGACGCGCAAACGCGTAAACTGTTGCCCGAAGAGCGCAGCGCGGTAG
AAAACTATCTCGATAACCTTAGCCAGATCCAGCAAGTTCCGGGGCCGACAGGCGCCAGTGCTGCGCCCATCTCGCTGACG
CTGAACGCGGAAAGCAACAGTGTCGTGATACTGACCCACTCCATCACCCGCTACGGCATTACCACTGACGATCCTAATAA
ATGGCGCTACTACCTCGACTCCGTCGAAGTCCATCTGCCGCCTTTCTGGGAACAGTACATCAATGATGAAAACAACGTTG
AGCTGATCCTCACGGATACGCTGCCGCTGGTGATCTCTTTAAACGGCCATACGCTGCAAGAGTATATGCAGGAGTCGCGC
GGCTACGCGCTACAGAATACGGCCTCTACGCAGGCGTCGATTCGCGGCGAAGAGAGCGAGCAGATTGAGCTGTTGAATAT
CCGTCAGGAGACCCACGAAGAATATGCGCTCAGCCGCCCGGCTGGCTTGCGCGAAGCGTTGTTAATCGTCGCCTCCTTTT
TGTTATTCTTTTTCTGTCTGATAACACCAGACGTTTTTGTACCGTGGATGATAGGCGGCGCGATCCTGCTGCTGGCAGCC
GGACTTTGGGGACTTTTTGCTCCGCCGTCGAAAAGCGCGCTGCGGGAAATTCACTGTCTGCGGGGAACGCCCCGCCGCTG
GGGACTGTTTGGGGAGAATAATCAGGAGCAGATTAACAATATTTCGCTGGGCATCATCGACCTTATTTACCCTGCCCACT
GGCAACCCTACATTACGCAGGATCTTGGGCAACAAACGGATATTGATATTTACCTTGATCGCCATGTCGCCCGCCAGGGC
CGGTTTTTATCCCTGCATGATGAAGTGAAAAACTTTCCGTTGCAGCACTGGTTACGCAGCACTGTTATTGCTATCGGTTC
GCTGCTGGTGTTGTTTATGCTGCTGTTCTGGATCCCGCTGGATATGCCAATTAAGTTCACGCTATCGTGGATAAAAGGCG
CGCAAACCATTGAAGCAACAACGGTAAAACAGCTTGAAAAAGCTGGCGTACGGGTGGGCGATACGCTGCACCTGAGCGGT
AAAGGAATGTGTAATATTCATTCCGGGGCGACCTGGAGCGGCCAGTCTAACTCCCCGTTTATGCCGTTCGATTGCTCGCA
AATCATCTGGAATGACGCGCCTGCGCTACCGCTGCCGGAATCAGATCTGGTGAATAAAGCGATGGCGCTAAGCCAGGCGG
TAAATCGTCAGCTCCATCCAAAACCCGAAGACGACTCGCGCGTCAGCGCATCTTTACGCTCCGCGATACAAAAATCGGGC
ATGGTATTATTAGATGACTTTGGCGATATTGTTCTGAAAACCGCTGATTTGTGCGCGGCGGAAGACGAGTGCGTGCGTCT
GAAAAATGCGCTGGTTAATCTCGGTAACAGTAAGGACTGGAACGCGCTGGTGAAACGCGCGAACGCCGGCAAACTGGACG
GCGTCAACGTGCTGCTACGCCCCGTAAGCGCAGAGTCGCTGGAAAATCTGGTCACGACCTCAACGGCGCCGTTTATTTCT
CGCGAGACCGCGCGTGCCGCCCAGTCGCTGAATAGCCCCGCTCCCGGCGGATTCCTGATCGCCAGCGATGAAGGCAGCGA
ACTGGTTGATCAGGCCTGGCCGTCAACGCCGCTGTATGACTATCCCGCGCAGGAACAGTGGAGCGCCTTCCAGCGTCTGG
CGCAAACGCTCATGCAGACGCCATTTAGCGCCGAGGGCATTGTCACCAGCGTGTATACCGATGCCAACGGCACGCAGCAT
ATCAGCCTGCATCGTATCCCCGATAAATCCGGCTGGTGGCGTTACCTCGGCACCACGCTGCTGATGTTGGCAATGATAGT
GAGCGCGGTCTACAACGGCATTCAGGCGTTCAGACGTTATCAACGCCACCGTACCCGTATGGCGGACATCCAGGAATACT
ATGAAAGCTGCCTCAATCCCAGGTTAACTGTCTCTCCGGAAAATCTCATCTGA

Upstream 100 bases:

>100_bases
AAGTTCAACTCCACGCTTGCCGATAGCCAACCACAGAAAAATGTTTATTGGACAGGGTGCGACTGACCACGCCTGACAGA
CTTAGTAAGATGGGGAAAGC

Downstream 100 bases:

>100_bases
TAGCGCCGCCGTGCGACAGGGTATGCTACCCTGTCGCGCAAATTGCGTTACCCTGGAGTTCCCCATGCATATTGATATTG
ACTGGCAAAACGTGGATACC

Product: intracellular growth attenuator protein IgaA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 710; Mature: 709

Protein sequence:

>710_residues
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLT
LNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR
GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQG
RFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWIKGAQTIEATTVKQLEKAGVRVGDTLHLSG
KGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFIS
RETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQH
ISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI

Sequences:

>Translated_710_residues
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLT
LNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR
GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQG
RFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWIKGAQTIEATTVKQLEKAGVRVGDTLHLSG
KGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFIS
RETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQH
ISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
>Mature_709_residues
STILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLTL
NAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRG
YALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAAG
LWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQGR
FLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWIKGAQTIEATTVKQLEKAGVRVGDTLHLSGK
GMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSGM
VLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFISR
ETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHI
SLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the igaA family [H]

Homologues:

Organism=Escherichia coli, GI1789801, Length=710, Percent_Identity=83.8028169014084, Blast_Score=1183, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010771
- ProDom:   PD147088 [H]

Pfam domain/function: PF07095 IgaA [H]

EC number: NA

Molecular weight: Translated: 79315; Mature: 79183

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCHHHHHHHHHHHHH
SQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLP
HHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCEECCCCCCCCCCCEEEEECEEEECC
PFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRGYALQNTASTQASIRGEESE
HHHHHHCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHCCCEEECCCCCHHHCCCCCCC
QIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
CEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQ
HHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
DLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPL
HCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
DMPIKFTLSWIKGAQTIEATTVKQLEKAGVRVGDTLHLSGKGMCNIHSGATWSGQSNSPF
CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
MPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLR
CEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEE
PVSAESLENLVTTSTAPFISRETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYD
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCCCCCC
YPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTL
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
LMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCC
>Mature Secondary Structure 
STILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRKLLPEERSAVENYLDNL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHCCCHHHHHHHHHHHHH
SQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITTDDPNKWRYYLDSVEVHLP
HHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCEECCCCCCCCCCCEEEEECEEEECC
PFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESRGYALQNTASTQASIRGEESE
HHHHHHCCCCCCEEEEEECCCEEEEEECCHHHHHHHHHHCCCEEECCCCCHHHCCCCCCC
QIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFFCLITPDVFVPWMIGGAILLLAA
CEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
GLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQEQINNISLGIIDLIYPAHWQPYITQ
HHHHCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
DLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPLQHWLRSTVIAIGSLLVLFMLLFWIPL
HCCCCCCEEEEECHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
DMPIKFTLSWIKGAQTIEATTVKQLEKAGVRVGDTLHLSGKGMCNIHSGATWSGQSNSPF
CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCC
MPFDCSQIIWNDAPALPLPESDLVNKAMALSQAVNRQLHPKPEDDSRVSASLRSAIQKSG
CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
MVLLDDFGDIVLKTADLCAAEDECVRLKNALVNLGNSKDWNALVKRANAGKLDGVNVLLR
CEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCEEE
PVSAESLENLVTTSTAPFISRETARAAQSLNSPAPGGFLIASDEGSELVDQAWPSTPLYD
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCCCCCC
YPAQEQWSAFQRLAQTLMQTPFSAEGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTL
CCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHH
LMLAMIVSAVYNGIQAFRRYQRHRTRMADIQEYYESCLNPRLTVSPENLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]