Click here to switch to the map view.

The map label for this gene is yajF [C]

Identifier: 194737147

GI number: 194737147

Start: 3748030

End: 3748911

Strand: Direct

Name: yajF [C]

Synonym: SeSA_A3880

Alternate gene names: 194737147

Gene position: 3748030-3748911 (Clockwise)

Preceding gene: 194738264

Following gene: 194737376

Centisome position: 79.59

GC content: 57.03

Gene sequence:

>882_bases
ATGCAGCAATATATCGGTATTGATGTGGGAGGAACTCACGTCAAATATGGCGTGATTAACAGTGACGGCGAAGAATTAAC
CCATCATCAATTCGATACGCCAGAGGACGCCTCCACGTTTACCCGCAAATGGCAGGATGTGGTGGCGCGTTGCCAACAGG
ACTATGACATTGCGGCAATCGGGGTCAGTTTCCCCGGCCATATTAATCCCCATAACGGTCATGCGGCAAAAGCGGGCGCG
CTGGCTTACCTGGATGACGTCAACCTGATGGAGTTGTTCAGCGGGCTGACCGATCTGCCGCTGGTCGTGGAGAACGACGC
GAACTGCGCGGCGCTGGGCGAAATGTGGCGAGGCGCCGGGCAGCATTATGACAATCTGGTCTGTATCACCATTGGAACCG
GCATTGGCGGCGGTATTATCGTCGGACGAGAGCTGTATCGCGGCGCACATTTCCATGCCGGTGAATTCGGCGTCATGCCG
GTCGGGAACAATGGCGAAAGTATGCATAAAATCGCGTCAACCAGCGGATTAATGGCGTCGTGCCGCCAGGCGCTGGCGCT
GCCTGCCGAAGAGATGCCGCCTGCGGATGTGATCTTCGAACGAATGGCGACCGATGTTCATCTGCGTGAGGCGGTCAATG
ACTGGGCGCGTTATCTGTCACGCGGCGTTTACAGCGTGATCTCTATGTTTGATCCGGGCGTGGTGCTGATCGGCGGAGGA
ATAAGCGAACAGGAAAAACTCTACCCGCTCCTGACGCGGCATCTTGAAACGTTTGAAATGTGGGAGGCGCTCCAGGTGCC
GATTCAGCCCTGCCAACTGGGAAATCAGGCGGGCAGGCTGGGCGCCGTCTGGCTGGCGCAGCAAAAACTCGACCGAAGCT
AA

Upstream 100 bases:

>100_bases
TCCCGCTTTACGACAGCAATCACGAATTACTTTCCTTTACGTTTCTCCGTCTGGTTTTAGCCATACTAAACAGGTGCCTG
TTTAACGTACGGAGAACACT

Downstream 100 bases:

>100_bases
CGTATTACGCCTTATCCGGCCTGCATCGTCTACGCAGGCCCGGTAAGCGTCCGCGCCACCGGGCAAAGGCGTTACATCGC
CGCGCGATAAATTTCCACAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGA
LAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMP
VGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGG
ISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS

Sequences:

>Translated_293_residues
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGA
LAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMP
VGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGG
ISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS
>Mature_293_residues
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGA
LAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMP
VGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGG
ISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS

Specific function: Unknown

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI87081733, Length=308, Percent_Identity=24.6753246753247, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787363, Length=302, Percent_Identity=25.1655629139073, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 31904; Mature: 31904

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAI
CCCEEEEEECCCEEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
GVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAG
EECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCC
QHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMPVGNNGESMHKIASTSGLMAS
CCCCCEEEEEECCCCCCHHEECHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
CRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGG
HHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
ISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVARCQQDYDIAAI
CCCEEEEEECCCEEEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
GVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAG
EECCCCCCCCCCCCCCCCCCEEEECCCCHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCC
QHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMPVGNNGESMHKIASTSGLMAS
CCCCCEEEEEECCCCCCHHEECHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHH
CRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGG
HHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
ISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]