| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is rpoN [H]
Identifier: 194737141
GI number: 194737141
Start: 3383542
End: 3384975
Strand: Direct
Name: rpoN [H]
Synonym: SeSA_A3512
Alternate gene names: 194737141
Gene position: 3383542-3384975 (Clockwise)
Preceding gene: 194735191
Following gene: 194736492
Centisome position: 71.85
GC content: 53.97
Gene sequence:
>1434_bases ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCTCAGCTACAACAGGCCATCCGTCTGTTGCA GTTGTCTACGCTGGAACTTCAGCAGGAACTCCAGCAAGCGTTGGAAAATAACCCGCTGCTTGAGCAAACCGATCTTCATG ACGAAATCGACACTCAGCAACCTCAGGATAACGATCCTCTCGATACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAA GAGCTGCCGCTTGACGCCAGTTGGGATGAAATTTACACCGCCGGGACGCCGTCCGGCCCCAGCGGCGATTATATCGACGA TGAGCTGCCCGTCTATCAGGGCGAAACGACGCAGTCGTTGCAGGATTATCTGATGTGGCAGGTTGAGCTAACGCCCTTCT CGGACACCGATCGCGCTATTGCGACATCCATTGTCGACGCGGTAGATGATACCGGTTATCTCACCGTATCCCTGGACGAA ATTCGCGAAAGCATGGGCGATGTAGAGGTGGATCTCGATGAGGTTGAAGCCGTTCTGAAGCGCATTCAGCGTTTTGATCC GGTAGGCGTCGCGGCAAAAGATCTTCGCGACTGTCTGCTGATCCAGCTTTCACAATTCGACAAATCCACGCCGTGGCTGG AAGAGGCGCGGCTTATTATCTGCGATCACCTTGATCTGCTGGCCAACCACGATTTCCGCACGTTGATGCGCGTTACCCGA CTAAAAGAAGAGGTGCTGAAAGAGGCGGTAAACCTGATTCAGTCGCTCGATCCCAGACCCGGTCAATCGATCCAGACCGG TGAGCCGGAGTACGTTATCCCGGATGTGCTGGTACGCAAGCATAACGGTCGCTGGACGGTGGAGCTTAATAGCGACAGTA TTCCCCGTTTACAGATTAACCAGCACTATGCCGCCATGTGCAACAGCGCGCGCAACGATGCCGACAGCCAGTTCATCCGC AGTAATTTACAGGATGCGAAGTGGCTGATAAAAAGCCTTGAAAGCCGCAACGACACGCTGCTGCGTGTCAGTCGCTGCAT CGTCGAGCAACAGCAAGCCTTTTTTGAACAGGGCGAAGAATATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG TCGAGATGCACGAATCCACCATATCCCGCGTGACCACGCAGAAGTATTTGCACAGCCCGCGCGGTATTTTTGAACTCAAA TATTTCTTTTCCAGCCACGTCAATACCGAAGGCGGAGGCGAAGCCTCTTCCACCGCGATTCGCGCGCTGGTGAAGAAGTT AATTGCGGCGGAAAACCCCGCGAAACCACTGAGCGACAGCAAGTTAACCTCTCTGCTGTCAGAACAAGGTATCATGGTGG CGCGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAACGCAAACAGCTGGTTTGA
Upstream 100 bases:
>100_bases TGCAAGACGAACACGTTAAGCGTGTATATCTTGGGGAAGACTTCAGACTCTGATAGGGTAGAGGGCTATGCTGCTCTAGC GGGAGAAAACGACTCTGAAT
Downstream 100 bases:
>100_bases CCCAACCGATAAGGAAGACACTATGCAGCTCAATATCACCGGACATAATGTCGAAATTACTGAAGCCCTGCGTGAATTTG TGACGACGAAATTCGCCAAA
Product: RNA polymerase factor sigma-54
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQPQDNDPLDTADALEQKEMPE ELPLDASWDEIYTAGTPSGPSGDYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDE IRESMGDVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDLLANHDFRTLMRVTR LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQINQHYAAMCNSARNDADSQFIR SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
Sequences:
>Translated_477_residues MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQPQDNDPLDTADALEQKEMPE ELPLDASWDEIYTAGTPSGPSGDYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDE IRESMGDVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDLLANHDFRTLMRVTR LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQINQHYAAMCNSARNDADSQFIR SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV >Mature_477_residues MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQPQDNDPLDTADALEQKEMPE ELPLDASWDEIYTAGTPSGPSGDYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDE IRESMGDVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDLLANHDFRTLMRVTR LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQINQHYAAMCNSARNDADSQFIR SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is responsible for the expression of enzymes involved in arginine catabolism. The open complex (sigma-
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=477, Percent_Identity=93.9203354297694, Blast_Score=920, Evalue=0.0,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 53989; Mature: 53989
Theoretical pI: Translated: 4.38; Mature: 4.38
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQ CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC PQDNDPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGPSGDYIDDELPVYQGETTQSL CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHH QDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDEIRESMGDVEVDLDEVEAVLK HHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCEECHHHHHHHHH RIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDLLANHDFRTLMRVTR HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHH LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQIN HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHEECCCEEEEEECCCCCCEEEEC QHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH YMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH RALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQTDLHDEIDTQQ CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC PQDNDPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGPSGDYIDDELPVYQGETTQSL CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCCCCHHHHH QDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDEIRESMGDVEVDLDEVEAVLK HHHHEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCEECHHHHHHHHH RIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARLIICDHLDLLANHDFRTLMRVTR HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCHHHHHHHHHHHHCCCHHHHHHHHH LKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQIN HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHEECCCEEEEEECCCCCCEEEEC QHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEE HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH YMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH RALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2203540; 8444818; 8025669; 7876255; 9278503 [H]