| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is xseA [H]
Identifier: 194736915
GI number: 194736915
Start: 2629164
End: 2630513
Strand: Direct
Name: xseA [H]
Synonym: SeSA_A2746
Alternate gene names: 194736915
Gene position: 2629164-2630513 (Clockwise)
Preceding gene: 194734325
Following gene: 194736638
Centisome position: 55.83
GC content: 58.22
Gene sequence:
>1350_bases ATGTTATCCTCTCAAACTTCCTCAATTTTTACCGTAAGCCGCCTTAACCAGACGGTTCGTCTGCTGTTGGAACAGGAGAT GGGACAGGTATGGATCAGCGGCGAGATTTCTAATTTCACGCAGCCTGCGTCGGGCCACTGGTACTTTACGCTCAAAGACG ATACCGCTCAGGTGCGCTGTGCGATGTTCCGTAACAGCAACCGCCGGGTGACGTTCCGCCCGCAGCACGGGCAGCAGGTG TTAGTCCGCGCCAATATCACGCTGTACGAGCCGCGCGGCGATTATCAAATCATCGCCGAAAGTATGCAGCCCGCGGGCGA AGGCTTGTTGCAGCAGAAATATGAGCAGCTAAAAGCCAAACTGCAGGCCGAAGGCTTGTTCGATCAGCAGCATAAACAGC AGTTGCCCTCCCCGGCCCACTGCGTTGGGGTGATCACTTCGAAAACCGGCGCGGCGCTGCACGATATTCTCCACGTGCTA AAGCGTCGTGACCCATCCCTGCCCGTTATTATCTATCCAACCGCAGTCCAGGGCGACGACGCGCCGGGGCAGATCGTTCG TGCTATCGAACTGGCGAACGCGCGCGGCGAATGTGATGTACTGATCGTCGGACGCGGCGGCGGTTCGCTGGAAGATTTGT GGAGTTTTAACGACGAACGCGTGGCGCGGGCGATTTTTGCCAGCCGTATTCCGGTGGTCAGCGCCGTCGGTCACGAAACG GACGTGACGATAGCTGATTTTGTCGCCGACCTGCGCGCGCCGACGCCATCAGCAGCGGCAGAAATTGTCAGCCGCAACCA GCAGGAGTTGTTGCGTCAGATTCAGTCCGCCCAGCAGCGCCTGGGCATGGCGATGGACTACTACCTCGCCAACCGCAGCC GTCGTTTCACGCAGATTTTTCACCGTCTGCAACAGCAACATCCGCAACTGCGTCTGGCCCGCCAGCAAACCGCGCTGGAA CGTTTACGCCAACGGATGGGATTTGCGCTTGAGGCCAGAATTAAGCAGGCCACTCAGCGCCAACAGCGCGTAAGTCAACG CCTGAGCCAGCAAAATCCGCAGCCGCGCATTCACCGTGCGCAGTCGCGCATCCAACAGCTGGAATATCGTCTGACGGAGA ATATCCGCTCACGGTTAAGCGAACAGCGCGAACGCTTTGGCAACGCGGTCACGCATCTGGAGGCGGTCAGCCCGTTAGCC ACGCTGGCGCGCGGCTATACGGTTTCGACGACAACGGACGGCAAAGTGCTGAAAAAGATCAAACAGGTCAAAGCAGGCGA TATCATGACCACGAGACTGGAGGACGGCTGGCTTGAAAGTGAAGTCAAATCCGTCACGCCGGGCACGTAA
Upstream 100 bases:
>100_bases GGTTGCATCTACATTTTTTTGCAAATAGTGCTTGCGATCCCCCGTGAGCAGGTTACTATCGATTGAATAACCTGCTGATT TAGAATTTGATCCCGCTCAC
Downstream 100 bases:
>100_bases TCCAACATTCCCCCACCCTTTGCAGCGCGATGTTGGGGTTCGACTTCGCCTCAGCCAACCTACGCGCCACATTGGATAAG GTGTAGCCATAATCTGACGA
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 449; Mature: 449
Protein sequence:
>449_residues MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQV LVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAKLQAEGLFDQQHKQQLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALE RLRQRMGFALEARIKQATQRQQRVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLA TLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT
Sequences:
>Translated_449_residues MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQV LVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAKLQAEGLFDQQHKQQLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALE RLRQRMGFALEARIKQATQRQQRVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLA TLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT >Mature_449_residues MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQV LVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAKLQAEGLFDQQHKQQLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALE RLRQRMGFALEARIKQATQRQQRVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLA TLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=447, Percent_Identity=87.4720357941834, Blast_Score=806, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 50685; Mature: 50685
Theoretical pI: Translated: 10.46; Mature: 10.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRC CCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHH AMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAK HHHCCCCCEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH LQAEGLFDQQHKQQLPSPAHCVGVITSKTGAALHDILHVLKRRDPSLPVIIYPTAVQGDD HHHCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC APGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET CHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHCCCCC DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIF CCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHH HRLQQQHPQLRLARQQTALERLRQRMGFALEARIKQATQRQQRVSQRLSQQNPQPRIHRA HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH QSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLATLARGYTVSTTTDGKVLKKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHH KQVKAGDIMTTRLEDGWLESEVKSVTPGT HHHHCCCEEEEECCCCHHHHHHHHCCCCC >Mature Secondary Structure MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPASGHWYFTLKDDTAQVRC CCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECCCHHHHH AMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAESMQPAGEGLLQQKYEQLKAK HHHCCCCCEEEECCCCCCEEEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH LQAEGLFDQQHKQQLPSPAHCVGVITSKTGAALHDILHVLKRRDPSLPVIIYPTAVQGDD HHHCCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC APGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFNDERVARAIFASRIPVVSAVGHET CHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHCCCHHHHHHHHHHHCCCHHHHCCCCC DVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQSAQQRLGMAMDYYLANRSRRFTQIF CCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHH HRLQQQHPQLRLARQQTALERLRQRMGFALEARIKQATQRQQRVSQRLSQQNPQPRIHRA HHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH QSRIQQLEYRLTENIRSRLSEQRERFGNAVTHLEAVSPLATLARGYTVSTTTDGKVLKKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHH KQVKAGDIMTTRLEDGWLESEVKSVTPGT HHHHCCCEEEEECCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA