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The map label for this gene is rfaP [H]

Identifier: 194736857

GI number: 194736857

Start: 3792034

End: 3792831

Strand: Reverse

Name: rfaP [H]

Synonym: SeSA_A3920

Alternate gene names: 194736857

Gene position: 3792831-3792034 (Counterclockwise)

Preceding gene: 194737226

Following gene: 194738265

Centisome position: 80.54

GC content: 46.12

Gene sequence:

>798_bases
ATGGTTGAGCTGAAAGCGCCGTTAACCACACTATGGCGCGGTAAAGATGCTTTTGAGGAAGTGAAAACGTTACAGGGCGA
AGTGTTCAGAGAGCTGGAGACGCGTCGAACATTGCGGTTTGAGCTGGACGGCAAAAGCTACTTCCTGAAGTGGCATAAAG
GCACTTCGCTGAAAGAAATTGTGAAGAACCTGATTTCGTTACGTATGCCTGTTCTGGGCGCTGACAGAGAATGGCACGCC
ATTCATCATCTACATGAGCTGGGCGTTGATACGATGCACGGCGTTGGTTTTGGTGAAAAAGGCGTAAATCCGCTAACCAG
AACATCATTTATTATCACCGAAGATTTAACGCCCACGATTAGCCTTGAAGACTACTGTGCTGACTGGGCTGTTAATCCAC
CGGACGCGCAGGTGAAGTGGATGATCATTAAGCGTGTTGCGACTATGGTACGTAAAATGCACGCCGGGGGAATTAACCAT
CGTGACTGTTATATTTGCCACTTTCTTCTGCATTTACCTTTCACAGGTCGTGAAGAGGATTTAAAAATCTCCGTAATCGA
CCTGCATCGCGCGCAGATACGTCAGCACGTTCCCCTTCGCTGGCGTGACAAGGATTTAATTGGGCTTTATTTTTCTTCAA
TGAATATTGGCCTGACTCAGCGAGATATATTCCGGTTTATGCGTGAGTATTTCTCTCTCCCCCTGCGAGAGATTTTGCAC
AAAGAATCGGGGTTGATTCATCAGGCGGATGTTAAAGCCGCTCGAATTAAAGAAAGAACAATAAGAAAAAATCTTTAA

Upstream 100 bases:

>100_bases
TTACGCAGCGCCTGGGCTGAAAATGCGCGGTATTATGCTGATACCCAGGATTTATACAGCTTACCGGAGAAGGCCGCAGA
TATTATTACAGGTGATTTAG

Downstream 100 bases:

>100_bases
TATAAAATTTATATATTTAAATAGCTTAGAGGCTATATGTTTCTATTCATATGCATGACTAATTTGCAATTATTGATTGC
ACGGTCAATTATAGAAAAAG

Product: lipopolysaccharide core biosynthesis protein RfaP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MVELKAPLTTLWRGKDAFEEVKTLQGEVFRELETRRTLRFELDGKSYFLKWHKGTSLKEIVKNLISLRMPVLGADREWHA
IHHLHELGVDTMHGVGFGEKGVNPLTRTSFIITEDLTPTISLEDYCADWAVNPPDAQVKWMIIKRVATMVRKMHAGGINH
RDCYICHFLLHLPFTGREEDLKISVIDLHRAQIRQHVPLRWRDKDLIGLYFSSMNIGLTQRDIFRFMREYFSLPLREILH
KESGLIHQADVKAARIKERTIRKNL

Sequences:

>Translated_265_residues
MVELKAPLTTLWRGKDAFEEVKTLQGEVFRELETRRTLRFELDGKSYFLKWHKGTSLKEIVKNLISLRMPVLGADREWHA
IHHLHELGVDTMHGVGFGEKGVNPLTRTSFIITEDLTPTISLEDYCADWAVNPPDAQVKWMIIKRVATMVRKMHAGGINH
RDCYICHFLLHLPFTGREEDLKISVIDLHRAQIRQHVPLRWRDKDLIGLYFSSMNIGLTQRDIFRFMREYFSLPLREILH
KESGLIHQADVKAARIKERTIRKNL
>Mature_265_residues
MVELKAPLTTLWRGKDAFEEVKTLQGEVFRELETRRTLRFELDGKSYFLKWHKGTSLKEIVKNLISLRMPVLGADREWHA
IHHLHELGVDTMHGVGFGEKGVNPLTRTSFIITEDLTPTISLEDYCADWAVNPPDAQVKWMIIKRVATMVRKMHAGGINH
RDCYICHFLLHLPFTGREEDLKISVIDLHRAQIRQHVPLRWRDKDLIGLYFSSMNIGLTQRDIFRFMREYFSLPLREILH
KESGLIHQADVKAARIKERTIRKNL

Specific function: Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protein kinase superfamily. KdkA/rfaP family [H]

Homologues:

Organism=Escherichia coli, GI1790060, Length=265, Percent_Identity=82.6415094339623, Blast_Score=458, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011009
- InterPro:   IPR017172
- InterPro:   IPR010440 [H]

Pfam domain/function: PF06293 Kdo [H]

EC number: 2.7.-.-

Molecular weight: Translated: 30987; Mature: 30987

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVELKAPLTTLWRGKDAFEEVKTLQGEVFRELETRRTLRFELDGKSYFLKWHKGTSLKEI
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCHHHH
VKNLISLRMPVLGADREWHAIHHLHELGVDTMHGVGFGEKGVNPLTRTSFIITEDLTPTI
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHCEEEEEECCCCCE
SLEDYCADWAVNPPDAQVKWMIIKRVATMVRKMHAGGINHRDCYICHFLLHLPFTGREED
EHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCC
LKISVIDLHRAQIRQHVPLRWRDKDLIGLYFSSMNIGLTQRDIFRFMREYFSLPLREILH
CEEEEEEHHHHHHHHCCCCEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHH
KESGLIHQADVKAARIKERTIRKNL
HHCCCEEHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVELKAPLTTLWRGKDAFEEVKTLQGEVFRELETRRTLRFELDGKSYFLKWHKGTSLKEI
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCCHHHH
VKNLISLRMPVLGADREWHAIHHLHELGVDTMHGVGFGEKGVNPLTRTSFIITEDLTPTI
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHCEEEEEECCCCCE
SLEDYCADWAVNPPDAQVKWMIIKRVATMVRKMHAGGINHRDCYICHFLLHLPFTGREED
EHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCC
LKISVIDLHRAQIRQHVPLRWRDKDLIGLYFSSMNIGLTQRDIFRFMREYFSLPLREILH
CEEEEEEHHHHHHHHCCCCEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHH
KESGLIHQADVKAARIKERTIRKNL
HHCCCEEHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9535865; 11677609; 8444813 [H]