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The map label for this gene is ppdD [H]

Identifier: 194736433

GI number: 194736433

Start: 167601

End: 168038

Strand: Reverse

Name: ppdD [H]

Synonym: SeSA_A0161

Alternate gene names: 194736433

Gene position: 168038-167601 (Counterclockwise)

Preceding gene: 194735829

Following gene: 194734628

Centisome position: 3.57

GC content: 54.11

Gene sequence:

>438_bases
ATGGAAAAACAACGCGGTTTCACGCTTATCGAACTGATGGTCGTTATTGGCATCATCGCCATTTTAAGCGCCATCGGCAT
TCCGGCTTACCAGAACTATCTGCGTAAAGCGGCGCTGACGGATATGTTGCAAACGTTTGTCCCCTACCGTACCGCCGTCG
AACTCTGCGCTCTGGAACATGGTGGGACGAGCACATGCGATGCGGGCGTCAACGGTATCCCCTCGCCCGTCATCACCCGT
TATGTTTCGGGCATGAGCGTGGAAAAAGGCGTCATCACGCTTACCGGCCAGGAGAGTCTGAGCGGGCTTAACGTCATCAT
GACGCCCGCCTGGGACAATGCTAACGGCATTACCGGCTGGACGCGTAACTGCAATATTCAAAGCGACAGCGCGTTACAAC
AGGCTTGTGAAGATGTCTTCCGTTTTGACGCCAACTAA

Upstream 100 bases:

>100_bases
GCGAAAATCTTCAGAATCCGCCTTCCCGTTTTACCTTTTGCCGCTCGCCCGCTCTTCCCGCGTTTGCCACAGTAGCGCCA
GCTAACTCAAGGAGCGAACA

Downstream 100 bases:

>100_bases
GGAGACAAGATGAAAGACGCTCAGCTCAACACATTGTGTCAACGTCATCAGGCTGTACTGATCAATAGCGCCAGCAACAG
TATCACTGTTGCGGTGGTCG

Product: putative major pilin subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITR
YVSGMSVEKGVITLTGQESLSGLNVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN

Sequences:

>Translated_145_residues
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITR
YVSGMSVEKGVITLTGQESLSGLNVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN
>Mature_145_residues
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITR
YVSGMSVEKGVITLTGQESLSGLNVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN

Specific function: Not yet known [H]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-Me-Phe pilin family [H]

Homologues:

Organism=Escherichia coli, GI1786297, Length=143, Percent_Identity=88.8111888111888, Blast_Score=272, Evalue=7e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 15631; Mature: 15631

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GGTSTCDAGVNGIPSPVITRYVSGMSVEKGVITLTGQESLSGLNVIMTPAWDNANGITGW
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCC
TRNCNIQSDSALQQACEDVFRFDAN
CCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GGTSTCDAGVNGIPSPVITRYVSGMSVEKGVITLTGQESLSGLNVIMTPAWDNANGITGW
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCC
TRNCNIQSDSALQQACEDVFRFDAN
CCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7959070; 8202364; 9278503 [H]