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The map label for this gene is lsrD [H]

Identifier: 194736325

GI number: 194736325

Start: 4163121

End: 4164119

Strand: Direct

Name: lsrD [H]

Synonym: SeSA_A4292

Alternate gene names: 194736325

Gene position: 4163121-4164119 (Clockwise)

Preceding gene: 194738301

Following gene: 194735672

Centisome position: 88.41

GC content: 49.55

Gene sequence:

>999_bases
ATGAATCCATGGCGACGCTATAGCTGGGAAATTGCGCTGGCAGCCTTATTGATCTTTGAAATTCTGGCTTTCGGTCTGAT
TAATCCACGTTTATTAGATATTAATGTCTTACTTTTTAGCACTAGCGATTTTATTTGTATCGGTATTGTCGCTTTGCCGC
TAACAATGGTTATTGTCAGCGGTGGTATGGATATTTCATTTGGTTCTACAATCGGGCTATGCGCGATTACCCTGGGTGTG
CTGTTTCAGCTCGGTATGCCGCTACCTTTAGCGATTATTATTACCCTACTACTCGGCGCAATATGTGGGCTGATAAATGC
CGGACTTATTATTTATACCGGCGTAAACCCGTTGGTGATTACCCTGGGAACCATGTATTTATTTGGTGGTAGCGCATTAT
TGTTATCTGGTATGGCTGGCGCCACGGGTTATGAAGGTATTGGTGGATTTCCCACAGCGTTCACTGACTTTTCCAATATT
TCATTTCTTGGTATTCCCATGCCGCTTATTTTTTTTCTTGTGTGCTGTCTGTTTTTCTGGCTGCTCATGCATCGCACGCA
TATGGGACGCAACGTTTTCCTGATTGGCCAGAGCGCCCGTGTCGCGCAGTACAGCGCGATCCCGGTGAATCGCACGTTGT
ATACCGTGTATGCCATGACCGGATGCGCCTCCGCGATCGCCGCCGTATTACTGGTTTCTTACTTTGGCTCCGCACGTTCG
GATCTGGGCGCCTCTTTCCTGATGCCGGCTATTACGGCGGTTGTGCTGGGAGGCGCCAATATTTATGGCGGCTCCGGGTC
GATTATGGGGTCCGCGTTGGCGGCGCTGCTGGTGGGATTTTTACAGCAGGGGCTACAGATGGCCGGAGTGCCGAATCAAA
TTTCCAGCGCATTGTCCGGTGCGCTTCTCATTGTTGTTGTCGTTGGTCGTTCCGTCAGTTTGCATCGTCACCAAATCCTT
GAATGGTACTCACGCCGTCGCAATGCGCATCAGGCATGA

Upstream 100 bases:

>100_bases
TGCGCCGCCAGAAATATGCCCGTTTTATATCACCACCCACTCCACTACAGACGGAAGCAAAAACGCACGCACAACAGAAT
AAAAACAAAGAGGTGGCATA

Downstream 100 bases:

>100_bases
TTTCCTTTTGAAATTTATGGAGAAAAAAATGGCAAGACACAGCATTAAAATGATCGCCTTACTCACTGCGTTTGGTCTGG
CATCTGCGGTAATGACCGTG

Product: inner membrane ABC transporter permease YdeZ

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIVSGGMDISFGSTIGLCAITLGV
LFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLVITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFSNI
SFLGIPMPLIFFLVCCLFFWLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSARS
DLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQIL
EWYSRRRNAHQA

Sequences:

>Translated_332_residues
MNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIVSGGMDISFGSTIGLCAITLGV
LFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLVITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFSNI
SFLGIPMPLIFFLVCCLFFWLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSARS
DLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQIL
EWYSRRRNAHQA
>Mature_332_residues
MNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIVSGGMDISFGSTIGLCAITLGV
LFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLVITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFSNI
SFLGIPMPLIFFLVCCLFFWLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSARS
DLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQIL
EWYSRRRNAHQA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=323, Percent_Identity=83.5913312693499, Blast_Score=505, Evalue=1e-144,
Organism=Escherichia coli, GI1790524, Length=309, Percent_Identity=29.126213592233, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788896, Length=313, Percent_Identity=27.7955271565495, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788471, Length=221, Percent_Identity=32.579185520362, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=28.2392026578073, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787793, Length=304, Percent_Identity=28.9473684210526, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI145693152, Length=261, Percent_Identity=29.1187739463602, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693214, Length=274, Percent_Identity=25.9124087591241, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=33.0882352941176, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082395, Length=307, Percent_Identity=24.4299674267101, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35150; Mature: 35150

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIVS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHC
GGMDISFGSTIGLCAITLGVLFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLVI
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHH
TLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFSNISFLGIPMPLIFFLVCCLFFW
HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCEEECCCHHHHHHHHHHHHHH
LLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSARS
HHHHHHHCCCEEEEEECCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
DLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALSG
HCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALLIVVVVGRSVSLHRHQILEWYSRRRNAHQA
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSDFICIGIVALPLTMVIVS
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHC
GGMDISFGSTIGLCAITLGVLFQLGMPLPLAIIITLLLGAICGLINAGLIIYTGVNPLVI
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHH
TLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFSNISFLGIPMPLIFFLVCCLFFW
HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCEEECCCHHHHHHHHHHHHHH
LLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVYAMTGCASAIAAVLLVSYFGSARS
HHHHHHHCCCEEEEEECCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
DLGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQQGLQMAGVPNQISSALSG
HCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
ALLIVVVVGRSVSLHRHQILEWYSRRRNAHQA
HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA