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The map label for this gene is kdgT1 [H]

Identifier: 194736304

GI number: 194736304

Start: 189036

End: 190049

Strand: Direct

Name: kdgT1 [H]

Synonym: SeSA_A0180

Alternate gene names: 194736304

Gene position: 189036-190049 (Clockwise)

Preceding gene: 194735821

Following gene: 194737373

Centisome position: 4.01

GC content: 56.21

Gene sequence:

>1014_bases
TTGATTGAATATAATCGTTATGATTTTATTCAATCACAACAAGCAACAGGCGGTAAGACCATGAACATCAAAAAAGCAAT
AGAGCGCGTACCCGGCGGCATGATGGTCGTACCGCTCGTTATTGGCGCAGTCATTAACACCTTCGCTCCACAGGCGCTTG
ATATCGGCGGTTTTACCACCGCCTTATTTAAAAACGGCGCGGCGCCGCTGATTGGCGCTTTTCTGCTGTGTATGGGAGCC
GGTATCAGTGTGAAAGCCGCACCCCAGGCGCTATTGCAGGGCGGGACGATTACGCTCACTAAGTTGCTTGTCGCCATCGG
GATTGGCCTGGGCGTGGAGCATCTTTTCGGCGCGGAGGGTATTTTTGGCCTGAGCGGCGTGGCGATTATCGCGGCGATGA
GCAATTCGAATGGCGGACTTTATGCTGCGCTGGTAGGCGAATTCGGCAATGAGCGCGACGTCGGCGCTATCTCTATTTTG
TCTCTTAATGATGGTCCTTTCTTTACGATGATTGCGCTGGGCGCGGCAGGGATGGCGAACATTCCCATTATGGCGCTGGT
GGCGGTGCTGGTTCCGCTGGTTGTCGGCATGATCCTCGGCAATCTTGATCCTCATATGCGCGATTTTTTGACCAAAGGCG
GCCCGCTGCTCATTCCTTTCTTTGCTTTTGCGCTGGGGGCGGGCATCAACCTGGAAATGTTACTGCAAGGCGGACTTGCC
GGAATTCTGCTCGGCGTGCTGACAACGTTTGTTGGCGGTTTCTTTAATATCCGCGCAGATCGTCTGGTTGGCGGAACTGG
CATTGCCGGGGCGGCGGCCTCCAGCACCGCGGGTAATGCCGTTGCGACGCCGCTGGCTATTGCGCAGGCCGACCCTTCGC
TCGCCGAGGTGGCCGCTGCTGCCGCTCCGCTGATTGCCGCCTCGGTGATCACCACGGCAATCCTGACGCCAGTGTTGACC
TCCTGGGTTGCGAAAAAACAGGCGCGTCAGGCTTCTTTGGAGAAAAACGCATGA

Upstream 100 bases:

>100_bases
CATTCCAGCCGGGAGTATCCCGGCTTTTTTATTGCAGAATGATTTTTTGATTTTTATTAATCATTTTAAAACTGTGATCT
GACGCGTTTGTGATCTTAAT

Downstream 100 bases:

>100_bases
AAATGATAGTCATCGCCGACGATTTTACCGGATCGAATGATACCGGCGTCCAGTTGGCGAAGAAGGGGGCGAGAACGGAA
GTCATGTTGAGCGCGTCGCA

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease 1 [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MIEYNRYDFIQSQQATGGKTMNIKKAIERVPGGMMVVPLVIGAVINTFAPQALDIGGFTTALFKNGAAPLIGAFLLCMGA
GISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEGIFGLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISIL
SLNDGPFFTMIALGAAGMANIPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGGLA
GILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAEVAAAAAPLIAASVITTAILTPVLT
SWVAKKQARQASLEKNA

Sequences:

>Translated_337_residues
MIEYNRYDFIQSQQATGGKTMNIKKAIERVPGGMMVVPLVIGAVINTFAPQALDIGGFTTALFKNGAAPLIGAFLLCMGA
GISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEGIFGLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISIL
SLNDGPFFTMIALGAAGMANIPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGGLA
GILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAEVAAAAAPLIAASVITTAILTPVLT
SWVAKKQARQASLEKNA
>Mature_337_residues
MIEYNRYDFIQSQQATGGKTMNIKKAIERVPGGMMVVPLVIGAVINTFAPQALDIGGFTTALFKNGAAPLIGAFLLCMGA
GISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEGIFGLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISIL
SLNDGPFFTMIALGAAGMANIPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGGLA
GILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAEVAAAAAPLIAASVITTAILTPVLT
SWVAKKQARQASLEKNA

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=322, Percent_Identity=45.0310559006211, Blast_Score=223, Evalue=1e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33998; Mature: 33998

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEYNRYDFIQSQQATGGKTMNIKKAIERVPGGMMVVPLVIGAVINTFAPQALDIGGFTT
CCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCHHH
ALFKNGAAPLIGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEG
HHHHCCCHHHHHHHHHHHCCCCCCHHCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCC
IFGLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISILSLNDGPFFTMIALGAAGMAN
CCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCC
IPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGGLA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHH
GILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAEVAAA
HHHHHHHHHHHCHHHEEEHHHEECCCCCCCCCCCCCCCCHHHCCHHHHCCCCHHHHHHHH
AAPLIAASVITTAILTPVLTSWVAKKQARQASLEKNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIEYNRYDFIQSQQATGGKTMNIKKAIERVPGGMMVVPLVIGAVINTFAPQALDIGGFTT
CCCCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCCCCHHH
ALFKNGAAPLIGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEG
HHHHCCCHHHHHHHHHHHCCCCCCHHCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCC
IFGLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISILSLNDGPFFTMIALGAAGMAN
CCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCC
IPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGGLA
CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHCCHH
GILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAEVAAA
HHHHHHHHHHHCHHHEEEHHHEECCCCCCCCCCCCCCCCHHHCCHHHHCCCCHHHHHHHH
AAPLIAASVITTAILTPVLTSWVAKKQARQASLEKNA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]