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The map label for this gene is rnfE [H]

Identifier: 194735735

GI number: 194735735

Start: 1493108

End: 1493800

Strand: Reverse

Name: rnfE [H]

Synonym: SeSA_A1552

Alternate gene names: 194735735

Gene position: 1493800-1493108 (Counterclockwise)

Preceding gene: 194734486

Following gene: 194736372

Centisome position: 31.72

GC content: 53.82

Gene sequence:

>693_bases
ATGAGCGAAATAAAAGACATTGTTGTTCAGGGGTTATGGAAAAATAACTCTGCTCTGGTGCAGCTACTTGGCCTGTGCCC
TTTACTGGCGGTGACGTCTACGGCAACCAACGCTCTGGGGCTGGGTCTGGCCACAACGCTGGTATTAACGCTGACCAACC
TTACGGTATCCGCACTACGTCGCTGGACGCCGGCAGAAATCCGTATCCCGATTTACGTTATGATCATTGCCTCGGTGGTA
AGCGCAGTACAGATGCTGATCAATGCGTATGCGTTCGGTTTATATCAGTCTTTAGGGATTTTTATTCCGCTGATTGTAAC
GAACTGCATTGTTGTCGGTCGCGCCGAAGCGTTTGCCGCGAAAAAAGGACCGTGGCTTTCCGCGTTGGACGGTTTTTCCA
TCGGCATGGGCGCGACAGGCGCGATGTTCGTGCTGGGTTCGCTGCGCGAGATCCTCGGGAATGGTACGCTTTTCGATGGC
GCGGATAGCCTGCTGGGAGGCTGGGCAAAAGTATTACGGGTCGAGATATTTCACACCGACTCGCCTTTCCTGCTGGCGAT
GCTGCCGCCAGGCGCGTTTATCGGCCTGGGGCTCATGCTGGCGGTAAAATATCTTATTGATGAAAAAATGAAGAAACGCC
GCGCCGAAACCGCGCCTTCCGCTGTTCCGGCAGGTGAAACAGGGAAAGTCTGA

Upstream 100 bases:

>100_bases
TAACGCCGCGCGCCGTGGTGAATGCGGTTAAACGCGCCGGGCTGTACGCCGAATCACTGCCCGCTCAGCTCCCCCATTTA
ACCGCCTGTGGAGAATAGCC

Downstream 100 bases:

>100_bases
TGAACAAAGCAAAAAGGCTGGAAATTCTGACGCGCCTGCGCGACAACAATCCGCACCCCACAACGGAACTCAATTTCACG
TCGCCGTTTGAGTTGCTGAT

Product: electron transport complex RsxE subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTVSALRRWTPAEIRIPIYVMIIASVV
SAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDG
ADSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETAPSAVPAGETGKV

Sequences:

>Translated_230_residues
MSEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTVSALRRWTPAEIRIPIYVMIIASVV
SAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDG
ADSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETAPSAVPAGETGKV
>Mature_229_residues
SEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTVSALRRWTPAEIRIPIYVMIIASVVS
AVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDGA
DSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETAPSAVPAGETGKV

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=231, Percent_Identity=90.4761904761905, Blast_Score=374, Evalue=1e-105,
Organism=Escherichia coli, GI1787914, Length=156, Percent_Identity=35.8974358974359, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 24318; Mature: 24187

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTVSALR
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAA
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDGADSLLGGWAKVLRVEIFHTD
CCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHEEEEEECC
SPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETAPSAVPAGETGKV
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLATTLVLTLTNLTVSALR
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFIPLIVTNCIVVGRAEAFAA
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
KKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDGADSLLGGWAKVLRVEIFHTD
CCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHEEEEEECC
SPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETAPSAVPAGETGKV
CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA