| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is dnaG
Identifier: 194735480
GI number: 194735480
Start: 3282031
End: 3283776
Strand: Direct
Name: dnaG
Synonym: SeSA_A3400
Alternate gene names: 194735480
Gene position: 3282031-3283776 (Clockwise)
Preceding gene: 194735467
Following gene: 194736124
Centisome position: 69.7
GC content: 51.72
Gene sequence:
>1746_bases ATGGCTGGACGAATCCCACGCGTATTCATTAATGACCTGCTGGCGAGAACCGATATCGTCGATCTGATCGACGTGCGCGT AAAACTCAAGAAACAGGGCAAGAACTATCACGCGTGTTGTCCATTCCATAATGAGAAAACCCCTTCTTTCACCGTAAACG GTGAAAAACAGTTTTATCACTGCTTTGGATGCGGCGCGCATGGCAATGCGATCGACTTTTTGATGAATTACGACAAGCTC GAATTTGTCGAAACCGTCGAAGAATTAGCGGCCATGCATAACCTGGAAATTCCCTATGAAGCAGGCACCGGGCTTAGCCA GATAGAGCGCCATCAACGGCAAAACCTCTATCAGTTGATGAATGGTCTGAATGACTTTTATCAGCAGTCGCTTACCCATC CTGCGGCAAAACCTGCGCGTGACTATCTGCAAAAGCGCGGTCTGAGCGCCGAAATTATTCAGCGTTTCGCCATTGGCTTC GCGCCGCCTGGTTGGGATAACGCGTTAAAGCGCTTCGGTAATAACAGCGATAACAAGGCATTGTTGCTGGATGCCGGAAT GCTGGTCAATAACGAGCAGGGCAGCACTTACGATCGTTTCCGTAATCGGGTCATGTTCCCTATTCGGGACAAACGCGGCA GGGTGATTGGTTTTGGCGGTCGAGTTCTGGGGAACGACACGCCGAAATACCTTAACTCTCCGGAAACGGACATTTTCCAT AAAGGCCGCCAGCTATATGGTCTTTATGAGGCTCAGCAATATAGTGCTGAACCGCAACGCTTGCTTGTGGTCGAAGGTTA TATGGATGTCGTCGCACTAGCGCAATACGACATTAACTATGCGGTTGCTTCGCTGGGTACCTCAACCACGGCAGACCATA TGCATATGTTATTCCGGGCGACGAACAACGTAATTTGCTGTTACGACGGCGACCGGGCTGGCCGTGATGCCGCCTGGAGA GCGCTGGAAACAGCAATGCCTTATATGACCGACGGTCGGCAGGTACGCTTTATGTTTTTACCTGACGGCGAAGACCCGGA TACGCTGGTGCGTAAAGAAGGCAAGGCGGCTTTTGAAGCGCGGATGGAGCAGGCGCAGCCGCTCTCTACGTTTCTGTTTA ATAGCCTCCTGCCGCAGGTGGATTTAAGCTCGCCGGATGGCAGCACGCAGTTAGCCGCGCTGGCGCTGCCGCTCATTAAT CAGGTGCCTGGCGACGCGCACCGTATTCAGCTGCGCCAGACGTTGGGGCTGAAGTTAGGCATTTTCGATGATAGTCAGCT TGATCGTTTAGTGCCAAAACAGGCGGAAAGCGGCGTTTCCCGCCCGGCTCCACAGCTAAAACGCACGACCATGCGTATAC TGATAGGATTACTGGTGCAAAATCCGGATCTCGCGCCGTTAGTGCCGCCCTTAGACGCGCTGGATCAGAATAAGCTGCCT GGACTTGGCTTATTTAAAGAATTGGTCAAAACTTGTTTGGCTCAGCCAGGTCTTACTACCGGACAACTTCTGGAACTCTA CCGTGGCACAAATGATGCTGCGACCCTTGAAAAATTATCGATGTGGGACGATATAGCAGATAAGGCGATTGCCGAAAAGA CCTTTACCGACTCACTCAACCATATGTTTGATTCGCTGCTGCAACTGCGACAAGAAGAGCTGATCGCTCGCGATCGCACT CACGGTTTAAGCAGCGAAGAACGCCGAGAGCTCTGGACGTTAAACCAGGAGCTGGCCAGAAAATGA
Upstream 100 bases:
>100_bases AGAGAGCAAGTCCCCGGCGCTTACGCAAGTCAGCGACAGGGATGAGCGAACGTAGCCAACACTACGGCAGCCTGAAGAAT GACGTGTATAAAAGGGGCAT
Downstream 100 bases:
>100_bases ATTTAACGGCTTAAATGCCGCATATCGATCGGGAAGCCCCCGACAGCCGCAGTGAGAGGCAGCGGCCAAAATATAAGTAT GCCCTCGCTTTAAATGTCGA
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 581; Mature: 580
Protein sequence:
>581_residues MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKL EFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGF APPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFH KGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRAGRDAAWR ALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLIN QVPGDAHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTTMRILIGLLVQNPDLAPLVPPLDALDQNKLP GLGLFKELVKTCLAQPGLTTGQLLELYRGTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLRQEELIARDRT HGLSSEERRELWTLNQELARK
Sequences:
>Translated_581_residues MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKL EFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGF APPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFH KGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRAGRDAAWR ALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLIN QVPGDAHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTTMRILIGLLVQNPDLAPLVPPLDALDQNKLP GLGLFKELVKTCLAQPGLTTGQLLELYRGTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLRQEELIARDRT HGLSSEERRELWTLNQELARK >Mature_580_residues AGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLE FVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFA PPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHK GRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRA LETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQ VPGDAHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTTMRILIGLLVQNPDLAPLVPPLDALDQNKLPG LGLFKELVKTCLAQPGLTTGQLLELYRGTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLRQEELIARDRTH GLSSEERRELWTLNQELARK
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain
Homologues:
Organism=Escherichia coli, GI1789447, Length=581, Percent_Identity=86.2306368330465, Blast_Score=1053, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PRIM_SALTY (P07362)
Other databases:
- EMBL: M14427 - EMBL: AE006468 - PIR: B23985 - RefSeq: NP_462125.1 - ProteinModelPortal: P07362 - PRIDE: P07362 - GeneID: 1254733 - GenomeReviews: AE006468_GR - KEGG: stm:STM3210 - HOGENOM: HBG573408 - OMA: GDALPKY - ProtClustDB: PRK05667 - BioCyc: STYP99287:STM3210-MONOMER - InterPro: IPR016136 - InterPro: IPR013264 - InterPro: IPR019475 - InterPro: IPR006295 - InterPro: IPR013173 - InterPro: IPR006171 - InterPro: IPR002694 - Gene3D: G3DSA:1.10.860.10 - Gene3D: G3DSA:3.90.980.10 - Gene3D: G3DSA:3.90.580.10 - SMART: SM00766 - SMART: SM00493 - SMART: SM00400 - TIGRFAMs: TIGR01391
Pfam domain/function: PF10410 DnaB_bind; PF08278 DnaG_DnaB_bind; PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2
EC number: 2.7.7.-
Molecular weight: Translated: 65363; Mature: 65232
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYH CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEECCCCEEEE CFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQLM EEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH NGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKA HHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCE LLLDAGMLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFH EEEECCEEEECCCCCHHHHHHCCEECEEECCCCCEEEECCEECCCCCHHHCCCCCHHHHH KGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRA CCCHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH TNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEA CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHH RMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDAHRIQLRQTLGLKLG HHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEHHHHHCCEEE IFDDSQLDRLVPKQAESGVSRPAPQLKRTTMRILIGLLVQNPDLAPLVPPLDALDQNKLP CCCCHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GLGLFKELVKTCLAQPGLTTGQLLELYRGTNDAATLEKLSMWDDIADKAIAEKTFTDSLN CHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HMFDSLLQLRQEELIARDRTHGLSSEERRELWTLNQELARK HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure AGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHNEKTPSFTVNGEKQFYH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEECCCCEEEE CFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQLM EEECCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH NGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKA HHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCE LLLDAGMLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFH EEEECCEEEECCCCCHHHHHHCCEECEEECCCCCEEEECCEECCCCCHHHCCCCCHHHHH KGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRA CCCHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH TNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEA CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHH RMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDAHRIQLRQTLGLKLG HHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHEEHHHHHCCEEE IFDDSQLDRLVPKQAESGVSRPAPQLKRTTMRILIGLLVQNPDLAPLVPPLDALDQNKLP CCCCHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GLGLFKELVKTCLAQPGLTTGQLLELYRGTNDAATLEKLSMWDDIADKAIAEKTFTDSLN CHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH HMFDSLLQLRQEELIARDRTHGLSSEERRELWTLNQELARK HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3005129; 11677609