Click here to switch to the map view.

The map label for this gene is rfaQ [H]

Identifier: 194735337

GI number: 194735337

Start: 3793945

End: 3795015

Strand: Reverse

Name: rfaQ [H]

Synonym: SeSA_A3922

Alternate gene names: 194735337

Gene position: 3795015-3793945 (Counterclockwise)

Preceding gene: 194734471

Following gene: 194737226

Centisome position: 80.59

GC content: 47.71

Gene sequence:

>1071_bases
GTGGAAAAGCCATTTCGAAGAATTCTGATTATAAAAATGCGTTTTCATGGAGACATGTTACTTACCACCCCTGTCATCAG
TACGCTGAAGCAGAATTATCCCGATGCAAAAATCGATGTGCTTCTTTACCAGAACACCATACCGATATTGTCGGAAAATC
CGGAGATTAATGCACTCTACGGCATCAGTAACAAAGGCGCAGGAACAAAAGAGAAGATTAAAAACGCGCTATCGCTAATC
AAAAAATTGCGTGCTAACTCGTATGATCTGGTCGTCAATCTCACCGATCAGTGGAGCGTGGCGCTTATTGTGCGTTTTTT
AAACGCAAAAACAAAAATCTCGCAGGATTTCGGTAATCGTCAGTCTGCTTTATGGAAAAAGAGCTTTACGCATTTAGTAC
CTTATGCGGGAGAACATGCTGTTGAGCGCACATTATCCGCGCTAAAGCCGTTAGCGTTAAAACAGTATGTCACGGAAACC
ACCATGAGCTATCGCCCGGAACATTGGGAAAACATGCGACAACAGCTCAAACAACTTGGTGTGACCCGACAATATGTTGT
TATTCAGCCTACGGCACGGCAGCTATTTAAGTGCTGGGATAATGATAAATTCTCTCAGGTTATTGATGCCGTGCAGCGCC
GCGGTTATCAGGTTGTACTGACGTCAGGCCCGGCCGCAGACGAGATGGCCTGCGTGGATGCTATTGCACGCGGCTGTGAG
ACAAAACCGGTTACTGGTCTGGCGGGTAAAACTCGCTTTCCTGAATTGGGCGCGTTGATTGACCATGCGGATCTCTTTAT
CGGCGTTGATTCGGCCCCTGGTCATATTGCCGCAGCAGTCAAAACGCCGGTCATTTGCCTTTTCGGCGCGACGGATCATG
TATTCTGGCGTCCCTGGACCGACGACATCATTCAGTTTTGGGCAGGAAATTATCAGCCGATGCCTGAACGGCATGAGCTT
GATCGTAATAAAAAATACCTTTCCGTGATTCCGGCTGAAGATGTTATCGCCGCGACGGAAAAAATGCTGCCGCATGAGGC
ACGCCCCATAGATTTGGACAGCCTGCTATGA

Upstream 100 bases:

>100_bases
AATGAGTGCGGTATTAGCCATCGGGTTGCTGTGAAGCCTGGGGCGGTAGCGTGCTTTTTTCTGCTTATTTATCCGGACAA
TTTCAACCAAAGAGTCGCTT

Downstream 100 bases:

>100_bases
GAGTTGCCTTTTGCTTATATAAATATTTTCCTTTTGGCGGTCTGCAGCGTGATTTTATGCGCATTGCCCAAACCGTGGCG
GCGCGAGGGCATCAGGTTCG

Product: lipopolysaccharide core biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MEKPFRRILIIKMRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEKIKNALSLI
KKLRANSYDLVVNLTDQWSVALIVRFLNAKTKISQDFGNRQSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTET
TMSYRPEHWENMRQQLKQLGVTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCE
TKPVTGLAGKTRFPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQPMPERHEL
DRNKKYLSVIPAEDVIAATEKMLPHEARPIDLDSLL

Sequences:

>Translated_356_residues
MEKPFRRILIIKMRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEKIKNALSLI
KKLRANSYDLVVNLTDQWSVALIVRFLNAKTKISQDFGNRQSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTET
TMSYRPEHWENMRQQLKQLGVTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCE
TKPVTGLAGKTRFPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQPMPERHEL
DRNKKYLSVIPAEDVIAATEKMLPHEARPIDLDSLL
>Mature_356_residues
MEKPFRRILIIKMRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALYGISNKGAGTKEKIKNALSLI
KKLRANSYDLVVNLTDQWSVALIVRFLNAKTKISQDFGNRQSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTET
TMSYRPEHWENMRQQLKQLGVTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCE
TKPVTGLAGKTRFPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWTDDIIQFWAGNYQPMPERHEL
DRNKKYLSVIPAEDVIAATEKMLPHEARPIDLDSLL

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=344, Percent_Identity=78.1976744186046, Blast_Score=567, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 40225; Mature: 40225

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKPFRRILIIKMRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALY
CCCCCEEEEEEEEEECCCEEEHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEE
GISNKGAGTKEKIKNALSLIKKLRANSYDLVVNLTDQWSVALIVRFLNAKTKISQDFGNR
ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCH
QSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTETTMSYRPEHWENMRQQLKQLG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
VTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCE
CCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCC
TKPVTGLAGKTRFPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWT
CCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCEEEECCCCEEEEECCCCCEEECCCH
DDIIQFWAGNYQPMPERHELDRNKKYLSVIPAEDVIAATEKMLPHEARPIDLDSLL
HHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHCC
>Mature Secondary Structure
MEKPFRRILIIKMRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEINALY
CCCCCEEEEEEEEEECCCEEEHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEE
GISNKGAGTKEKIKNALSLIKKLRANSYDLVVNLTDQWSVALIVRFLNAKTKISQDFGNR
ECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCH
QSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTETTMSYRPEHWENMRQQLKQLG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
VTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMACVDAIARGCE
CCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCCC
TKPVTGLAGKTRFPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLFGATDHVFWRPWT
CCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCEEEECCCCEEEEECCCCCEEECCCH
DDIIQFWAGNYQPMPERHELDRNKKYLSVIPAEDVIAATEKMLPHEARPIDLDSLL
HHHHHHHCCCCCCCCCHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]