Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 194735316

GI number: 194735316

Start: 2019211

End: 2019879

Strand: Reverse

Name: yecS [H]

Synonym: SeSA_A2108

Alternate gene names: 194735316

Gene position: 2019879-2019211 (Counterclockwise)

Preceding gene: 194736078

Following gene: 194734491

Centisome position: 42.89

GC content: 54.56

Gene sequence:

>669_bases
ATGCAAGAAAGTATCCAACTGGTTATTGAATCGCTGCCGTATTTGCTTAAAGGCGCCGTCTTTACCCTGCAACTGAGTAT
TGGCGGTATGTTTTTTGGTCTGCTGCTGGGATTTGTGCTGGCGCTGATGCGGATGTCTCCGCTATGGCCGGTTCGCTGGC
TGGCGCGCTTTTATATCTCGATTTTTCGCGGTACGCCGCTTATCGCCCAGTTATTTATGATCTATTACGGCCTGCCGCAA
TTTGGGATTGAGCTGGACCCTATCCCGGCGGCGATGATTGGTTTATCGCTCAATACCGCGGCTTACACGTCCGAGACGCT
GCGCGCGGCGATCTCGGCTATCGACAAGGGACAATGGGAAGCGGCGGCGAGCATTGGCATGACGCCGTGGCAAACGCTAC
GTCGCGCTATTTTGCCGCAGGCGGCTCGTGTCGCGCTTCCGCCGTTGAGCAACAGCTTTATCAGCCTGGTGAAAGATACG
TCGCTCGCCGCGACGATTCAGGTGCCGGAGTTGTTCCGCCAGGCGCAGTTAATTACCTCGCGAACGCTGGAGGTGTTTAC
CATGTATCTGGCCGCGTCGTTAATCTACTGGGTAATGGCGACCGTCTTATCGGCACTGCAAAACTATTTTGAAAACCAGC
TTAACCGCCAGGAGAGAGAGCCAAAATGA

Upstream 100 bases:

>100_bases
GCTTTAACGATGACGGGCCGATTCTCTTTATTCACACCGGTGGGGCGCCTGCGCTGTTTGCCTACCATCCTCATGTATAA
CCTCCAGGTAATCAACGCGA

Downstream 100 bases:

>100_bases
GTGCGATCGAAGTCACCAACCTGGTCAAAAAATTTCATGGTCAAACGGTGCTGCACGGTATCGACCTTGAGGTGAAGCCC
GGAGAAGTCGTCGCCATTAT

Product: amino acid ABC transporter His/Glu/Gln/Arg/opine family, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMRMSPLWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPIPAAMIGLSLNTAAYTSETLRAAISAIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQEREPK

Sequences:

>Translated_222_residues
MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMRMSPLWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPIPAAMIGLSLNTAAYTSETLRAAISAIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQEREPK
>Mature_222_residues
MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMRMSPLWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQ
FGIELDPIPAAMIGLSLNTAAYTSETLRAAISAIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT
SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQEREPK

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=93.2432432432432, Blast_Score=422, Evalue=1e-119,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=37.8504672897196, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1787030, Length=207, Percent_Identity=35.2657004830918, Blast_Score=133, Evalue=9e-33,
Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=35.2941176470588, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI87082239, Length=211, Percent_Identity=37.4407582938389, Blast_Score=110, Evalue=7e-26,
Organism=Escherichia coli, GI1787087, Length=232, Percent_Identity=31.0344827586207, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788645, Length=203, Percent_Identity=33.9901477832512, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1788646, Length=210, Percent_Identity=29.5238095238095, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1786874, Length=198, Percent_Identity=31.8181818181818, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI48994930, Length=171, Percent_Identity=35.672514619883, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24840; Mature: 24840

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMRMSPLWPVRWLARFYIS
CCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAYTSETLRAAISAIDKGQWE
HHCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH
AAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS
HHHHCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCHHHEEEHHHHHHHHHHHHHH
RTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQEREPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMRMSPLWPVRWLARFYIS
CCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAYTSETLRAAISAIDKGQWE
HHCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH
AAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITS
HHHHCCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCHHHEEEHHHHHHHHHHHHHH
RTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQEREPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]